python-pyfaidx 0.8.1.1-1 source package in Ubuntu
Changelog
python-pyfaidx (0.8.1.1-1) unstable; urgency=medium * New upstream version -- Étienne Mollier <email address hidden> Sat, 20 Jan 2024 18:36:47 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Oracular | release | universe | misc | |
| Noble | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| python-pyfaidx_0.8.1.1-1.dsc | 2.5 KiB | e5201d9995a70d5aea963a0f35392bf6629b6e72122c808d78a7302fc1167058 |
| python-pyfaidx_0.8.1.1.orig.tar.gz | 94.3 KiB | c20059a5ecf0b57d263501cefc192f8e1a8b08e8f730fafced0e3bc04e3c20ef |
| python-pyfaidx_0.8.1.1-1.debian.tar.xz | 6.8 KiB | 58f7bbdfa76406e7d9f2917f5e0e7abafe7ca679c03c15a07cc94739e6873865 |
Available diffs
- diff from 0.8.0-2 to 0.8.1.1-1 (840 bytes)
No changes file available.
Binary packages built by this source
- python-pyfaidx-examples: example data for efficient random access to fasta subsequences for Python
Samtools provides a function "faidx" (FAsta InDeX), which creates a
small flat index file ".fai" allowing for fast random access to any
subsequence in the indexed FASTA file, while loading a minimal amount of
the file in to memory. This Python module implements pure Python classes
for indexing, retrieval, and in-place modification of FASTA files using
a samtools compatible index. The pyfaidx module is API compatible with
the pygr seqdb module. A command-line script "faidx" is installed
alongside the pyfaidx module, and facilitates complex manipulation of
FASTA files without any programming knowledge.
.
This package provides example data to test the Python modules.
- python3-pyfaidx: efficient random access to fasta subsequences for Python 3
Samtools provides a function "faidx" (FAsta InDeX), which creates a
small flat index file ".fai" allowing for fast random access to any
subsequence in the indexed FASTA file, while loading a minimal amount of
the file in to memory. This Python module implements pure Python classes
for indexing, retrieval, and in-place modification of FASTA files using
a samtools compatible index. The pyfaidx module is API compatible with
the pygr seqdb module. A command-line script "faidx" is installed
alongside the pyfaidx module, and facilitates complex manipulation of
FASTA files without any programming knowledge.
.
This package provides the Python 3 modules to access fasta files.
