Ubuntu
python-sqt package

python-sqt 0.8.0-6 source package in Ubuntu

Changelog

python-sqt (0.8.0-6) unstable; urgency=medium

  * Team upload.
  * d/watch: move to git mode; repair broken bitbucket link.
  * d/sqt.1: fix groff messages about lines too long.
  * pytest.patch: add; port test suite from nose to pytest.
  * d/control: build depends on pytest instead of nose. (Closes: #1018582)
  * Update standards version to 4.6.1, no changes needed.

 -- Étienne Mollier <email address hidden>  Sat, 03 Dec 2022 16:26:29 -0000

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

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File Size SHA-256 Checksum
python-sqt_0.8.0-6.dsc 2.3 KiB 772b6944a7051de985ab1a4db8dc15e2a0a0aad0fdfd817a6f19d09fb335d0f1
python-sqt_0.8.0.orig.tar.gz 113.8 KiB 86a938fcf41d64a175c234b2156b674d5f4d615fa869341d985c0e05480e5f22
python-sqt_0.8.0-6.debian.tar.xz 6.3 KiB 856b951f2357b405480e000df1f3734bc190c25bdcf27df2cdbdbf4a09320155

No changes file available.

Binary packages built by this source

python3-sqt: SeQuencing Tools for biological DNA/RNA high-throughput data

 sqt is a collection of command-line tools for working with
 high-throughput sequencing data. Conceptionally not fixed to use any
 particular language, many sqt subcommands are currently implemented
 in Python. For them, a Python package is available with functions for
 reading and writing FASTA/FASTQ files, computing alignments, quality
 trimming, etc.
 .
 The following tools are offered:
  * sqt-coverage -- Compute per-reference statistics such as coverage
    and GC content
  * sqt-fastqmod -- FASTQ modifications: shorten, subset, reverse
    complement, quality trimming.
  * sqt-fastastats -- Compute N50, min/max length, GC content etc. of
    a FASTA file
  * sqt-qualityguess -- Guess quality encoding of one or more FASTA files.
  * sqt-globalalign -- Compute a global or semiglobal alignment of two strings.
  * sqt-chars -- Count length of the first word given on the command line.
  * sqt-sam-cscq -- Add the CS and CQ tags to a SAM file with colorspace reads.
  * sqt-fastamutate -- Add substitutions and indels to sequences in a
    FASTA file.
  * sqt-fastaextract -- Efficiently extract one or more regions from an
    indexed FASTA file.
  * sqt-translate -- Replace characters in FASTA files (like the 'tr'
    command).
  * sqt-sam-fixn -- Replace all non-ACGT characters within reads in a
    SAM file.
  * sqt-sam-insertsize -- Mean and standard deviation of paired-end
    insert sizes.
  * sqt-sam-set-op -- Set operations (union, intersection, ...) on
    SAM/BAM files.
  * sqt-bam-eof -- Check for the End-Of-File marker in compressed
    BAM files.
  * sqt-checkfastqpe -- Check whether two FASTQ files contain correctly
    paired paired-end data.

python3-sqt-dbgsym: debug symbols for python3-sqt