r-bioc-dada2 1.26.0+dfsg-1 source package in Ubuntu
Changelog
r-bioc-dada2 (1.26.0+dfsg-1) unstable; urgency=medium * Team upload. * New upstream version * Reduce piuparts noise in transitions (routine-update) * Remove unused license definitions for GPL-2.0+. -- Andreas Tille <email address hidden> Mon, 21 Nov 2022 18:17:32 +0100
Upload details
- Uploaded by:
- Debian R Packages Maintainers
- Uploaded to:
- Sid
- Original maintainer:
- Debian R Packages Maintainers
- Architectures:
- any-amd64
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Lunar | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| r-bioc-dada2_1.26.0+dfsg-1.dsc | 2.2 KiB | 32d8bb3e5260cb52844b8fb8704c7ce5d3f67f0e89facad9c70049ade0845fb2 |
| r-bioc-dada2_1.26.0+dfsg.orig.tar.xz | 2.1 MiB | fe09e73186273b8f495e98bd7cf8691845d4346b072153ae88793a8262205db0 |
| r-bioc-dada2_1.26.0+dfsg-1.debian.tar.xz | 3.3 KiB | 588eacd65ee6d0c8b30ad0e2859947e03a3ad5cf7d4ad94679cac75a4688ee8b |
Available diffs
No changes file available.
Binary packages built by this source
- r-bioc-dada2: sample inference from amplicon sequencing data
The dada2 package contributes to software workflows to interpret
sequencing data from microbiota - the relative abundance of
bacterial and/or yeast, typically measured in the gut.
It infers exact amplicon sequence
variants (ASVs) from high-throughput amplicon sequencing data,
replacing the coarser and less accurate OTU clustering approach.
The dada2 pipeline takes as input demultiplexed fastq files, and
outputs the sequence variants and their sample-wise abundances
after removing substitution and chimera errors. Taxonomic
classification is available via a native implementation of the RDP
naive Bayesian classifier, and species-level assignment to 16S
rRNA gene fragments by exact matching.
- r-bioc-dada2-dbgsym: debug symbols for r-bioc-dada2
