r-bioc-dada2 1.28.0+dfsg-1 source package in Ubuntu
Changelog
r-bioc-dada2 (1.28.0+dfsg-1) unstable; urgency=medium * Team upload. * New upstream version * Standards-Version: 4.6.2 (routine-update) * Set upstream metadata fields: Repository-Browse. * Lintian-overrides for custom-library-search-path -- Andreas Tille <email address hidden> Thu, 27 Jul 2023 06:30:32 +0200
Upload details
- Uploaded by:
- Debian R Packages Maintainers
- Uploaded to:
- Sid
- Original maintainer:
- Debian R Packages Maintainers
- Architectures:
- any-amd64
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Mantic | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| r-bioc-dada2_1.28.0+dfsg-1.dsc | 2.2 KiB | 82e1f66fcd26d2d7c4a332e6364fe3cd7cfe130c69a1c4b752c7565d21246c80 |
| r-bioc-dada2_1.28.0+dfsg.orig.tar.xz | 2.1 MiB | a1b3588c864427ab8cdd591883554858fec61d9b72fb86016a171798c47d5fda |
| r-bioc-dada2_1.28.0+dfsg-1.debian.tar.xz | 3.4 KiB | 7e64c0069e92540c820901603091995001c67f8a98ba2fa0f6a2f5c3bfaf6bfa |
Available diffs
- diff from 1.26.0+dfsg-1 to 1.28.0+dfsg-1 (2.2 KiB)
No changes file available.
Binary packages built by this source
- r-bioc-dada2: sample inference from amplicon sequencing data
The dada2 package contributes to software workflows to interpret
sequencing data from microbiota - the relative abundance of
bacterial and/or yeast, typically measured in the gut.
It infers exact amplicon sequence
variants (ASVs) from high-throughput amplicon sequencing data,
replacing the coarser and less accurate OTU clustering approach.
The dada2 pipeline takes as input demultiplexed fastq files, and
outputs the sequence variants and their sample-wise abundances
after removing substitution and chimera errors. Taxonomic
classification is available via a native implementation of the RDP
naive Bayesian classifier, and species-level assignment to 16S
rRNA gene fragments by exact matching.
- r-bioc-dada2-dbgsym: debug symbols for r-bioc-dada2
