Ubuntu
reapr package

reapr 1.0.18+dfsg-5ubuntu1 source package in Ubuntu

Changelog

reapr (1.0.18+dfsg-5ubuntu1) noble; urgency=medium

  * Drop hard-coded dependency on shared library. ${shlib:Depends} is
    working these days.

 -- Matthias Klose <email address hidden>  Sat, 23 Mar 2024 18:15:57 +0100

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Uploaded by:
Matthias Klose
Uploaded to:
Noble
Original maintainer:
Ubuntu Developers
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
reapr_1.0.18+dfsg.orig.tar.gz 72.9 KiB 70a9c252474fbbd36360c49589af18ca1599289eff2e98fb8cb7614583cb28a6
reapr_1.0.18+dfsg-5ubuntu1.debian.tar.xz 312.4 KiB 57ebff49582497c8c6ce77be74b0c1ef76e737e9ad0e78b4651f00198ab186ab
reapr_1.0.18+dfsg-5ubuntu1.dsc 2.2 KiB c5c7e975850607db362bfa2bcbf49726fd24c69d45d5f08b978343af21e77bfa

Available diffs

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Binary packages built by this source

reapr: universal tool for genome assembly evaluation

 REAPR is a tool that evaluates the accuracy of a genome assembly using mapped
 paired end reads, without the use of a reference genome for comparison. It can
 be used in any stage of an assembly pipeline to automatically break incorrect
 scaffolds and flag other errors in an assembly for manual inspection. It
 reports mis-assemblies and other warnings, and produces a new broken assembly
 based on the error calls.
 .
 The software requires as input an assembly in FASTA format and paired reads
 mapped to the assembly in a BAM file. Mapping information such as the fragment
 coverage and insert size distribution is analysed to locate mis-assemblies.
 REAPR works best using mapped read pairs from a large insert library (at least
 1000bp). Additionally, if a short insert Illumina library is also available,
 REAPR can combine this with the large insert library in order to score each
 base of the assembly.

reapr-dbgsym: debug symbols for reapr