Ubuntu
rna-star package

rna-star 2.5.0a+dfsg-1 source package in Ubuntu

Changelog

rna-star (2.5.0a+dfsg-1) unstable; urgency=medium

  * Packaging moved from svn to git
  * New upstream version

 -- Andreas Tille <email address hidden>  Thu, 31 Dec 2015 12:41:06 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Xenial release universe misc

Downloads

File Size SHA-256 Checksum
rna-star_2.5.0a+dfsg-1.dsc 2.0 KiB 231703a8e013c4094fbf94c1259c6b12f5c3c4d20e7fbf1a10ec739cc360996d
rna-star_2.5.0a+dfsg.orig.tar.xz 309.2 KiB 1d4a2b3450229e9bb03b4b62f606fbb43a39dcd31db58a3ab7e7e338c179f15a
rna-star_2.5.0a+dfsg-1.debian.tar.xz 5.8 KiB bd1161b8840340004dd9331488be8b3710d66a248aed02a73a38ee21c5f582dc

Available diffs

No changes file available.

Binary packages built by this source

rna-star: No summary available for rna-star in ubuntu yakkety.

No description available for rna-star in ubuntu yakkety.

rna-star-dbgsym: debug symbols for package rna-star

 Spliced Transcripts Alignment to a Reference (STAR) software based on a
 previously undescribed RNA-seq alignment algorithm that uses sequential
 maximum mappable seed search in uncompressed suffix arrays followed by
 seed clustering and stitching procedure. STAR outperforms other aligners
 by a factor of >50 in mapping speed, aligning to the human genome 550
 million 2 × 76 bp paired-end reads per hour on a modest 12-core server,
 while at the same time improving alignment sensitivity and precision. In
 addition to unbiased de novo detection of canonical junctions, STAR can
 discover non-canonical splices and chimeric (fusion) transcripts, and is
 also capable of mapping full-length RNA sequences. Using Roche 454
 sequencing of reverse transcription polymerase chain reaction amplicons,
 the authors experimentally validated 1960 novel intergenic splice
 junctions with an 80-90% success rate, corroborating the high precision
 of the STAR mapping strategy.