Ubuntu
rsem package

rsem 1.3.3+dfsg-1 source package in Ubuntu

Changelog

rsem (1.3.3+dfsg-1) unstable; urgency=medium

  * Update homepage
  * New upstream version, added hisat2 mode
  * Standards-Version: 4.5.0 (routine-update)

 -- Michael R. Crusoe <email address hidden>  Mon, 17 Feb 2020 15:49:34 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Focal release universe misc

Downloads

File Size SHA-256 Checksum
rsem_1.3.3+dfsg-1.dsc 2.1 KiB 61a08c418863affcefb2e5d0f8f91fc9ea7c5685dacc5edd3a821433111d1452
rsem_1.3.3+dfsg.orig.tar.xz 268.9 KiB 43037765382f8942a03595eb12ee2ed68081f9f828cb2832388354a12ee00990
rsem_1.3.3+dfsg-1.debian.tar.xz 34.0 MiB a4c9fefd0bd541134a2f3a9c66fe099433fbca1588fae11fe14c961ce1a5707d

No changes file available.

Binary packages built by this source

rsem: RNA-Seq by Expectation-Maximization

 RSEM is a software package for estimating gene and isoform expression
 levels from RNA-Seq data. The RSEM package provides an user-friendly
 interface, supports threads for parallel computation of the EM
 algorithm, single-end and paired-end read data, quality scores,
 variable-length reads and RSPD estimation. In addition, it provides
 posterior mean and 95% credibility interval estimates for expression
 levels. For visualization, It can generate BAM and Wiggle files in both
 transcript-coordinate and genomic-coordinate. Genomic-coordinate files
 can be visualized by both UCSC Genome browser and Broad Institute’s
 Integrative Genomics Viewer (IGV). Transcript-coordinate files can be
 visualized by IGV. RSEM also has its own scripts to generate transcript
 read depth plots in pdf format. The unique feature of RSEM is, the read
 depth plots can be stacked, with read depth contributed to unique reads
 shown in black and contributed to multi-reads shown in red. In addition,
 models learned from data can also be visualized. Last but not least,
 RSEM contains a simulator.

rsem-dbgsym: debug symbols for rsem