salmon 1.9.0+ds1-1 source package in Ubuntu
Changelog
salmon (1.9.0+ds1-1) unstable; urgency=medium
[ Andreas Tille ]
* Team upload.
* New upstream version (Closes: #1008254)
[ Étienne Mollier ]
* Standards-Version: 4.6.1 (routine-update)
* Refresh use_debian_packaged_libs.patch, disable-version-check.patch and
spelling patch.
* d/external/: bump pufferfish version to support onetbb. (Closes: #1011662)
* d/external/: update twopaco to fix ftbfs with onetbb.
* d/external/install/: update to reflect changes in embedded pufferfish.
* Unvendor embedded cereal in embedded pufferfish. (Closes: #1008252)
* verbose-test.patch: make test failures more verbose.
* d/salsa-ci.yml: disable run on i386
-- Étienne Mollier <email address hidden> Sat, 05 Nov 2022 20:45:44 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any-amd64 arm64
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Lunar | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| salmon_1.9.0+ds1-1.dsc | 2.6 KiB | 3c6b68cf0fe0e6e2915e1a8734d18490414692692449b0c91e93ac85fb229a37 |
| salmon_1.9.0+ds1.orig.tar.xz | 5.5 MiB | 7ab756d2d70c73bc7ce70cc2695ac0e1083f1cf55d8dfbe09d6d6e4fe1f80833 |
| salmon_1.9.0+ds1-1.debian.tar.xz | 1.2 MiB | d724200d4e2dee36973f04af7f4682d3fbc02cdab85b04bc175bb3d1705c68df |
Available diffs
No changes file available.
Binary packages built by this source
- salmon: wicked-fast transcript quantification from RNA-seq data
Salmon is a wicked-fast program to produce a highly-accurate, transcript-level
quantification estimates from RNA-seq data. Salmon achieves is accuracy and
speed via a number of different innovations, including the use of lightweight
alignments (accurate but fast-to-compute proxies for traditional read
alignments) and massively-parallel stochastic collapsed variational inference.
The result is a versatile tool that fits nicely into many different pipelines.
For example, you can choose to make use of the lightweight alignments by
providing Salmon with raw sequencing reads, or, if it is more convenient, you
can provide Salmon with regular alignments (e.g. computed with your favorite
aligner), and it will use the same wicked-fast, state-of-the-art inference
algorithm to estimate transcript-level abundances for your experiment.
- salmon-dbgsym: debug symbols for salmon
