Ubuntu
samtools package

samtools 0.1.19-1 source package in Ubuntu

Changelog

samtools (0.1.19-1) unstable; urgency=low


  cb9bd50 Imported https://github.com/samtools/samtools/archive/0.1.19.tar.gz
  1e6d442 new tools ace2sam, bamcheck, plot-bamcheck, r2plot.lua, vcfutils.lua.
  2f2d5c5 debian/copyright: collapsed copyright notices from main holders.
  e194f9e Removed fix_float_tag.patch, corrected upstream.
  9c0e543 Refreshed patches.
  3e7e0ec Renamed no-pileup-tests.patch fix_example_makefile.patch.
  8d8550e example/Makefile: pass -lpthread when compiling calDepth.
  fc32243 harden by concatenating Debian's LDFLAGS and CPPFLAGS in CFLAGS.
  6f75b48 debian/control: normalised with cme.
  e13bb5e debian/control: normalised VCS URLs.
  a1b1b00 debian/control: deleted DM-Upload-Allowed field.
  ddcd54e Use NEWS as upstream changelog.
  81ad760 Conforms to Policy version 3.9.4.

 -- Charles Plessy <email address hidden>  Sat, 30 Mar 2013 17:31:47 +0900

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
science
Urgency:
Low Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Trusty release universe science

Downloads

File Size SHA-256 Checksum
samtools_0.1.19-1.dsc 2.0 KiB 3574ea9b873a28e1a15523bb336aea1572b4af2b0ad6000314377f5ca0a04d14
samtools_0.1.19.orig.tar.gz 544.7 KiB 180c120a040ec660ebecc30ebae664772c0fd503e028173ab2496379bc208c17
samtools_0.1.19-1.debian.tar.gz 10.0 KiB 980683591cb084f5f825baeffb3c7f08acf01a1a13b8f41e3770b3ee731190a3

Available diffs

No changes file available.

Binary packages built by this source

libbam-dev: manipulates nucleotide sequence alignments in BAM or SAM format

 The BAM library provides I/O and various operations on manipulating nucleotide
 sequence alignments in the BAM (Binary Alignment/Mapping) or SAM (Sequence
 Alignment/Map) format. It now supports importing from or exporting to SAM,
 sorting, merging, generating pileup, and quickly retrieval of reads overlapped
 with a specified region.
 .
 This library is part of SAMtools.

samtools: processing sequence alignments in SAM and BAM formats

 Samtools is a set of utilities that manipulate nucleotide sequence alignments
 in the binary BAM format. It imports from and exports to the ascii SAM
 (Sequence Alignment/Map) format, does sorting, merging and indexing, and allows
 to retrieve reads in any regions swiftly. It is designed to work on a stream,
 and is able to open a BAM (not SAM) file on a remote FTP or HTTP server.