Ubuntu
seer package

seer 1.1.4-7build2 source package in Ubuntu

Changelog

seer (1.1.4-7build2) noble; urgency=medium

  * No-change rebuild for boost defaults change.

 -- Matthias Klose <email address hidden>  Tue, 19 Dec 2023 15:55:48 +0100

Upload details

Uploaded by:
Matthias Klose
Uploaded to:
Noble
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
seer_1.1.4.orig.tar.gz 949.4 KiB 96e55b9fe2cde089ff05bbcd55088832e90f44a968a81a8dca9f9cffa6faa9c1
seer_1.1.4-7build2.debian.tar.xz 9.1 KiB 7ef45fbe4866c6f19d039dcf1fd217c1ee082539a4c10e6959350bc4082d9159
seer_1.1.4-7build2.dsc 2.0 KiB b04395e3ee20627bff18cb5e134b9a063d67f329720c60b359b3befb624179d8

Available diffs

View changes file

Binary packages built by this source

seer: genomic sequence element (kmer) enrichment analysis

 Bacterial genomes vary extensively in terms of both gene content and
 gene sequence - this plasticity hampers the use of traditional SNP-based
 methods for identifying all genetic associations with phenotypic
 variation. SEER provides a computationally scalable and widely
 applicable statistical method for the identification of sequence
 elements that are significantly enriched in a phenotype of interest.
 SEER is applicable to even tens of thousands of genomes by counting variable-
 length k-mers using a distributed string-mining algorithm. Robust
 options are provided for association analysis that also correct for the
 clonal population structure of bacteria. Using large collections of
 genomes of the major human pathogen Streptococcus pneumoniae, SEER
 identifies relevant previously characterised resistance determinants for
 several antibiotics.

seer-dbgsym: debug symbols for seer