Ubuntu
seqan-needle package

seqan-needle 1.0.1.0.0.git.3011926+ds-2 source package in Ubuntu

Changelog

seqan-needle (1.0.1.0.0.git.3011926+ds-2) unstable; urgency=medium

  * Rename binary to seqan-needle, add symlink and README.Debian
    Closes: #1023807

 -- Michael R. Crusoe <email address hidden>  Wed, 16 Nov 2022 17:00:44 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
seqan-needle_1.0.1.0.0.git.3011926+ds-2.dsc 2.2 KiB ec112fae685fa1b2bf890303129e3d7fb25105c1c7254e632c179e899b1ec946
seqan-needle_1.0.1.0.0.git.3011926+ds.orig.tar.xz 4.8 MiB 6ec1cf11797f5d7660970bb1ed8a1d58eafc61ba8bc2bc5afcbb61582413298b
seqan-needle_1.0.1.0.0.git.3011926+ds-2.debian.tar.xz 5.6 KiB 1ddda5ee0e816ca6ad20f128b0b8991f43aca0d325a5046ebea093972f59515e

No changes file available.

Binary packages built by this source

seqan-needle: pre-filter for the counting of very large collections of nucleotide sequences

 Needle is a tool for semi-quantitative analysis of very large collections of
 nucleotide sequences.
 .
 Needle stores its data in multiple interleaved Bloom filter, a fast and space
 efficient probabilistic data structure and uses a windowing scheme (also called
 minimisers) to reduce the amount of data to store. How many interleaved Bloom
 filter are used is defined by the user. Each interleaved Bloom filter has a so
 called expression threshold and stores minimisers with an occurrence greater
 than or equal to its own expression threshold and smaller than the next biggest
 expression threshold (if there is no bigger expression threshold, all greater
 than or equal to the threshold are stored). These expression thresholds are
 then used during the query (called estimate) to approximate the expression
 values of given transcripts.

seqan-needle-dbgsym: debug symbols for seqan-needle