seqprep 1.3.2-4 source package in Ubuntu
Changelog
seqprep (1.3.2-4) unstable; urgency=medium
* Replace python-markdown by markdown
* Use 2to3 to port from Python2 to Python3
Closes: #938467
* debhelper-compat 12
* Standards-Version: 4.4.1
* Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
* Remove trailing whitespace in debian/changelog
* autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g
* Set upstream metadata fields: Bug-Database, Repository, Repository-
Browse.
* Do not call ronn for every build just to rebuild manpage - rather
provide manpage itself
-- Andreas Tille <email address hidden> Tue, 17 Dec 2019 12:52:12 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| seqprep_1.3.2-4.dsc | 2.1 KiB | fdec67f2760c76c78834abc8a01355576c6b3fc60b0c5db612a7c962e88e9ec3 |
| seqprep_1.3.2.orig.tar.gz | 35.5 MiB | 2b8a462a0e0a3e51f70be7730dc77b1f2bb69e74845dd0fbd2110a921c32265a |
| seqprep_1.3.2-4.debian.tar.xz | 10.6 KiB | f74b968753e8780254314beb9c63431e1e9955be9403bf759d337ec35b3e78ce |
Available diffs
- diff from 1.3.2-3 to 1.3.2-4 (8.6 KiB)
No changes file available.
Binary packages built by this source
- seqprep: stripping adaptors and/or merging paired reads of DNA sequences with overlap
SeqPrep is a program to merge paired end Illumina reads that are overlapping
into a single longer read. It may also just be used for its adapter trimming
feature without doing any paired end overlap. When an adapter sequence is
present, that means that the two reads must overlap (in most cases) so they
are forcefully merged. When reads do not have adapter sequence they must be
treated with care when doing the merging, so a much more specific approach is
taken. The default parameters were chosen with specificity in mind, so that
they could be ran on libraries where very few reads are expected to overlap.
It is always safest though to save the overlapping procedure for libraries
where you have some prior knowledge that a significant portion of the reads
will have some overlap.
- seqprep-data: example data set for seqprep - only used for testing
SeqPrep is a program to merge paired end Illumina reads that are overlapping
into a single longer read. It may also just be used for its adapter trimming
feature without doing any paired end overlap. When an adapter sequence is
present, that means that the two reads must overlap (in most cases) so they
are forcefully merged. When reads do not have adapter sequence they must be
treated with care when doing the merging, so a much more specific approach is
taken. The default parameters were chosen with specificity in mind, so that
they could be ran on libraries where very few reads are expected to overlap.
It is always safest though to save the overlapping procedure for libraries
where you have some prior knowledge that a significant portion of the reads
will have some overlap.
.
This package is not needed for normal operation of seqprep. It simply
serves some test data as well as a test script.
- seqprep-dbgsym: debug symbols for seqprep
