Ubuntu
t-coffee package

t-coffee 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 source package in Ubuntu

Changelog

t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) unstable; urgency=medium

  [ Étienne Mollier ]
  * d/t/run-unit-test: don't meddle with user's home.
  * d/rules: build with -fsigned-char.
    This fixes infinite loops on CPU architectures defaulting to the char
    type being unsigned, such as on arm*, ppc* and s390*. (Closes: #1023230)
  * d/control: add myself to uploaders.

  [ Andreas Tille ]
  * Revert version bump to latest upstream version until
     https://github.com/cbcrg/tcoffee/issues/56
    is closed.
    Closes: #1022570
  * Keep updated patches in debian/patches dir with suffix .13.45.0.4846264
    to ease upgrading to the new version once it is ready

 -- Andreas Tille <email address hidden>  Fri, 25 Nov 2022 11:13:19 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
science
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Noble release universe science
Mantic release universe science
Lunar release universe science

Downloads

File Size SHA-256 Checksum
t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1.dsc 2.3 KiB 943f72d4090cf2a8b88ab2a79b5aa119622201b3c7e50377cb8d92c4e72636f7
t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg.orig.tar.xz 3.1 MiB a1b37c67caba574ccf53c38279863dffa67d62232e017317754b5eb29db60746
t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1.debian.tar.xz 17.9 KiB 3e83e95b016af77d28fc7d8315979dd397f12f333bcd4a45be5f471dbd9964ed

No changes file available.

Binary packages built by this source

t-coffee: Multiple Sequence Alignment

 T-Coffee is a multiple sequence alignment package. Given a set of
 sequences (Proteins or DNA), T-Coffee generates a multiple sequence
 alignment. Version 2.00 and higher can mix sequences and structures.
 .
 T-Coffee allows the combination of a collection of multiple/pairwise,
 global or local alignments into a single model. It can also
 estimate the level of consistency of each position within the new
 alignment with the rest of the alignments. See the pre-print for more
 information
 .
 T-Coffee has a special called M-Coffee that makes it possible to combine the
 output of many multiple sequence alignment packages. In its published version,
 it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and
 T-Coffee. A special version has been made for Debian, DM-Coffee, that uses
 only free software by replacing Clustal W by Kalign. Using the 8 Methods of
 M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite
 methods if you prefer.

t-coffee-dbgsym: debug symbols for t-coffee
t-coffee-examples: annotated examples for the use of T-Coffee

 To help increasing the proficiency in the use of T-Coffee, this
 package provides examples for input sequences and their proper
 alignment.