Ubuntu
tandem-mass package

tandem-mass 1:2013.06.15-1 source package in Ubuntu

Changelog

tandem-mass (1:2013.06.15-1) unstable; urgency=low


  * quilt dependencies removed from rules. quilt is now used the modern
    way as decribed in http://pkg-perl.alioth.debian.org/howto/quilt.html

  * Packaging of X!Tandem (JACKHAMMER 2013.06.15, from
    http://www.thegpm.org/TANDEM/) for Debian GNU/Linux
    (Olivier Langella <email address hidden>, with the
    great help of Filippo Rusconi <email address hidden>);

  * Upload by Filippo Rusconi <email address hidden>;

 -- The Debichem Group <email address hidden>  Thu, 29 Aug 2013 12:21:32 +0200

Upload details

Uploaded by:
Debichem Team
Uploaded to:
Sid
Original maintainer:
Debichem Team
Architectures:
any
Section:
misc
Urgency:
Low Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
tandem-mass_2013.06.15-1.dsc 1.4 KiB 1eac54810901e7640b8ea18f93ee528d163a287976aff532be8c48bf53c2c537
tandem-mass_2013.06.15.orig.tar.gz 2.5 MiB 38780f0837feb6bee8913c83d73cc6cf17fe9b8a01a8d3dec9726c3349174422
tandem-mass_2013.06.15-1.debian.tar.gz 4.9 KiB 4b754fa2e00349a6c7518396f36300286e4be0706b85682c5460cc1d54e6f603

No changes file available.

Binary packages built by this source

tandem-mass: mass spectrometry software for protein identification

 X! Tandem can match tandem mass spectra with peptide sequences, in a
 process that is commonly used to perform protein identification.
 .
 This software has a very simple, unsophisticated application
 programming interface (API): it simply takes an XML file of
 instructions on its command line, and outputs the results into an XML
 file, which has been specified in the input XML file. The output file
 format is described at
 \fI`http://www.thegpm.org/docs/X_series_output_form.pdf'\fR.
 .
 Unlike some earlier generation search engines, all of the X! Series
 search engines calculate statistical confidence (expectation values)
 for all of the individual spectrum-to-sequence assignments. They also
 reassemble all of the peptide assignments in a data set onto the
 known protein sequences and assign the statistical confidence that
 this assembly and alignment is non-random. The formula for which can
 be found here. Therefore, separate assembly and statistical analysis
 software, e.g. PeptideProphet and ProteinProphet, do not need to be
 used.