tnseq-transit 2.1.2-1 source package in Ubuntu


tnseq-transit (2.1.2-1) unstable; urgency=medium

  * New upstream version
  * Point Vcs fields to
  * Standards-Version: 4.1.4

 -- Andreas Tille <email address hidden>  Tue, 22 May 2018 16:41:34 +0200

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Uploaded by:
Debian Med on 2018-05-22
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Original maintainer:
Debian Med
Medium Urgency

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Series Pocket Published Component Section
Cosmic release on 2018-05-23 universe misc


File Size SHA-256 Checksum
tnseq-transit_2.1.2-1.dsc 2.0 KiB 569faf8678b3014dabaf762dc25cddf3f6b10f4320a1ec023f9db110b8eab411
tnseq-transit_2.1.2.orig.tar.gz 17.2 MiB bd57573cbe655ac1b22bc3938ad8f3532b6e4f9a9d8329af25204383d18b3052
tnseq-transit_2.1.2-1.debian.tar.xz 2.3 KiB c974094d1d18f95490f420a575a8bf037bf04f116974069e4fe6b253bb892eed

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tnseq-transit: statistical calculations of essentiality of genes or genomic regions

 This is a software that can be used to analyze Tn-Seq datasets. It
 includes various statistical calculations of essentiality of genes or
 genomic regions (including conditional essentiality between 2
 conditions). These methods were developed and tested as a collaboration
 between the Sassetti lab (UMass) and the Ioerger lab (Texas A&M)
 TRANSIT is capable of analyzing TnSeq libraries constructed with Himar1
 or Tn5 datasets.
 TRANSIT assumes you have already done pre-processing of raw sequencing
 files (.fastq) and extracted read counts into a .wig formatted file.
 The .wig file should contain the counts at all sites where an insertion
 could take place (including sites with no reads). For Himar1 datasets
 this is all TA sites in the genome. For Tn5 datasets this would be all
 nucleotides in the genome.