transdecoder 3.0.1+dfsg-1 source package in Ubuntu
Changelog
transdecoder (3.0.1+dfsg-1) unstable; urgency=medium * Add Multi-Arch: foreign hint to transdecoder-doc * New upstream release -- Michael R. Crusoe <email address hidden> Thu, 10 Nov 2016 03:21:20 -0800
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| transdecoder_3.0.1+dfsg-1.dsc | 2.1 KiB | f7618d814172b83c20faf7252e6daccf2152380b9d835da777d6236310edaab9 |
| transdecoder_3.0.1+dfsg.orig.tar.xz | 10.6 MiB | 044b1c7629f76e5ba0a748c6a7af9bea22312f98b4cee8f7310d56e64c0873f0 |
| transdecoder_3.0.1+dfsg-1.debian.tar.xz | 4.7 KiB | 7ada4c7898a79c0e53d7cb59623d11047bb1950cc4758f621e862ac177f553d4 |
Available diffs
- diff from 3.0.0+dfsg-3 to 3.0.1+dfsg-1 (3.0 KiB)
No changes file available.
Binary packages built by this source
- transdecoder: No summary available for transdecoder in ubuntu zesty.
No description available for transdecoder in ubuntu zesty.
- transdecoder-doc: find coding regions within transcripts
TransDecoder identifies candidate coding regions within transcript sequences,
such as those generated by de novo RNA-Seq transcript assembly using Trinity,
or constructed based on RNA-Seq alignments to the genome using Tophat and
Cufflinks.
.
TransDecoder identifies likely coding sequences based on the following
criteria:
* a minimum length open reading frame (ORF) is found in a transcript sequence
* a log-likelihood score similar to what is computed by the GeneID software
is > 0.
* the above coding score is greatest when the ORF is scored in the 1st
reading frame as compared to scores in the other 5 reading frames.
* if a candidate ORF is found fully encapsulated by the coordinates of
another candidate ORF, the longer one is reported. However, a single
transcript can report multiple ORFs (allowing for operons, chimeras, etc).
* optional the putative peptide has a match to a Pfam domain above the noise
cutoff score.
.
This package contains the documentation and sample data.
