transdecoder 5.0.1-1 source package in Ubuntu
Changelog
transdecoder (5.0.1-1) unstable; urgency=medium
* New upstream version (no need to repackage since binary files are now
removed upstream)
* Upstream changelog: cdhit has been removed and replaced by our own fast
method for removing redundancies
* Standards-Version: 4.1.3
* debhelper 11
* Add missing Depends: r-base-core, python
* d/rules: do not parse d/changelog
* Fix permissions
-- Andreas Tille <email address hidden> Mon, 19 Feb 2018 15:11:06 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Bionic | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| transdecoder_5.0.1-1.dsc | 2.1 KiB | 7eec7b317312b79e05c1029e3442c5a6558ea58a38aeb281a92bc5d16f8539ce |
| transdecoder_5.0.1.orig.tar.gz | 12.5 MiB | 7b8295557cd6a59eb34e84ea97409293e4c894157d29e9a50e11110ec6752a39 |
| transdecoder_5.0.1-1.debian.tar.xz | 4.6 KiB | a6dbb3cacd36a18d2c0a93a56cbfe4dd7e048387c81b95d3afa977697141fd45 |
Available diffs
- diff from 3.0.1+dfsg-1 to 5.0.1-1 (1.8 MiB)
No changes file available.
Binary packages built by this source
- transdecoder: No summary available for transdecoder in ubuntu disco.
No description available for transdecoder in ubuntu disco.
- transdecoder-doc: find coding regions within transcripts
TransDecoder identifies candidate coding regions within transcript sequences,
such as those generated by de novo RNA-Seq transcript assembly using Trinity,
or constructed based on RNA-Seq alignments to the genome using Tophat and
Cufflinks.
.
TransDecoder identifies likely coding sequences based on the following
criteria:
* a minimum length open reading frame (ORF) is found in a transcript sequence
* a log-likelihood score similar to what is computed by the GeneID software
is > 0.
* the above coding score is greatest when the ORF is scored in the 1st
reading frame as compared to scores in the other 5 reading frames.
* if a candidate ORF is found fully encapsulated by the coordinates of
another candidate ORF, the longer one is reported. However, a single
transcript can report multiple ORFs (allowing for operons, chimeras, etc).
* optional the putative peptide has a match to a Pfam domain above the noise
cutoff score.
.
This package contains the documentation and sample data.
