trnascan-se 2.0.0-1 source package in Ubuntu
Changelog
trnascan-se (2.0.0-1) unstable; urgency=medium
[ Steffen Moeller ]
* debian/upstream/metadata:
- Added references to registries
- yamllint cleanliness
* upstream/metadata RRID->SciCrunch
[ Afif Elghraoui ]
* debian/watch: update to new URL
* New upstream version
* Standards-Version 4.1.3
* debhelper compat 11
* d/rules: clean up and remove dh_installchangelogs
* Overhaul packaging for new build system
* d/copyright: license change (GPL 2+ -> 3+); updated copyright years
* install examples
* Add dependency on infernal
* Update autopkgtest
-- Afif Elghraoui <email address hidden> Sat, 24 Feb 2018 22:18:01 -0500
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| trnascan-se_2.0.0-1.dsc | 2.1 KiB | fa58c26ae13f90155a533f14b27a4ba88adb66a0c51d186f36369de484b9d85b |
| trnascan-se_2.0.0.orig.tar.gz | 4.2 MiB | 0dde1c07142e4bf77b21d53ddf3eeb1ef8c52248005a42323d13f8d7c798100c |
| trnascan-se_2.0.0-1.debian.tar.xz | 5.7 KiB | 5c48ed5e03df2c352bf15de09a3bca8857e1197d6a0edae77c4b25cb894a51e0 |
No changes file available.
Binary packages built by this source
- trnascan-se: detection of transfer RNA genes in genomic sequence
tRNAscan-SE identifies 99-100% of transfer RNA genes in DNA sequence while
giving less than one false positive per 15 gigabases. Two previously described
tRNA detection programs are used as fast, first-pass prefilters to identify
candidate tRNAs, which are then analyzed by a highly selective tRNA covariance
model. This work represents a practical application of RNA covariance models,
which are general, probabilistic secondary structure profiles based on
stochastic context-free grammars. tRNAscan-SE searches at ~ 30 000 bp/s.
Additional extensions to tRNAscan-SE detect unusual tRNA homologues such as
selenocysteine tRNAs, tRNA-derived repetitive elements and tRNA pseudogenes.
- trnascan-se-common: detection of transfer RNA genes in genomic sequence (common files)
tRNAscan-SE identifies 99-100% of transfer RNA genes in DNA sequence while
giving less than one false positive per 15 gigabases. Two previously described
tRNA detection programs are used as fast, first-pass prefilters to identify
candidate tRNAs, which are then analyzed by a highly selective tRNA covariance
model. This work represents a practical application of RNA covariance models,
which are general, probabilistic secondary structure profiles based on
stochastic context-free grammars. tRNAscan-SE searches at ~ 30 000 bp/s.
Additional extensions to tRNAscan-SE detect unusual tRNA homologues such as
selenocysteine tRNAs, tRNA-derived repetitive elements and tRNA pseudogenes.
.
This package contains the architecture-independent common files.
- trnascan-se-dbgsym: No summary available for trnascan-se-dbgsym in ubuntu cosmic.
No description available for trnascan-se-dbgsym in ubuntu cosmic.
