Ubuntu
trnascan-se package

trnascan-se 2.0.10+ds-1 source package in Ubuntu

Changelog

trnascan-se (2.0.10+ds-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * Standards-Version: 4.6.1 (routine-update)
  * No tab in license text (routine-update)

 -- Andreas Tille <email address hidden>  Mon, 26 Sep 2022 21:44:54 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Lunar release multiverse misc

Downloads

File Size SHA-256 Checksum
trnascan-se_2.0.10+ds-1.dsc 2.1 KiB 6ed510bc989790fd0b6a86b550d4603c78de7f9f9aeca34daa46af08d6457358
trnascan-se_2.0.10+ds.orig.tar.gz 4.1 MiB 75f723420bf691062b3bb88c2c903232d727b7b632eff77e653e1154a5e3d214
trnascan-se_2.0.10+ds-1.debian.tar.xz 11.1 KiB affdb8271540ee2d60bc84ffc1f4b58ed64639713471eb5113df9188ffa15615

Available diffs

No changes file available.

Binary packages built by this source

trnascan-se: detection of transfer RNA genes in genomic sequence

 tRNAscan-SE identifies 99-100% of transfer RNA genes in DNA sequence while
 giving less than one false positive per 15 gigabases. Two previously described
 tRNA detection programs are used as fast, first-pass prefilters to identify
 candidate tRNAs, which are then analyzed by a highly selective tRNA covariance
 model. This work represents a practical application of RNA covariance models,
 which are general, probabilistic secondary structure profiles based on
 stochastic context-free grammars. tRNAscan-SE searches at ~ 30 000 bp/s.
 Additional extensions to tRNAscan-SE detect unusual tRNA homologues such as
 selenocysteine tRNAs, tRNA-derived repetitive elements and tRNA pseudogenes.

trnascan-se-common: detection of transfer RNA genes in genomic sequence (common files)

 tRNAscan-SE identifies 99-100% of transfer RNA genes in DNA sequence while
 giving less than one false positive per 15 gigabases. Two previously described
 tRNA detection programs are used as fast, first-pass prefilters to identify
 candidate tRNAs, which are then analyzed by a highly selective tRNA covariance
 model. This work represents a practical application of RNA covariance models,
 which are general, probabilistic secondary structure profiles based on
 stochastic context-free grammars. tRNAscan-SE searches at ~ 30 000 bp/s.
 Additional extensions to tRNAscan-SE detect unusual tRNA homologues such as
 selenocysteine tRNAs, tRNA-derived repetitive elements and tRNA pseudogenes.
 .
 This package contains the architecture-independent common files.

trnascan-se-dbgsym: debug symbols for trnascan-se