velvet 0.7.55-1 source package in Ubuntu
Changelog
velvet (0.7.55-1) unstable; urgency=low * New upstream version velvet (0.7.53-1) unstable; urgency=low * New upstream release: - Ignored reads in Pebble corrected - Added automatic measure of median coverage and median insert length - Updated manual to cover the above velvet (0.7.52-1) unstable; urgency=low * New upstream release: V 0.7.51 - Small parsing bug - Correction to the observed-insert-length script - Verified strncpy calls - NCBI friendly 10bp N-gaps V 0.7.52 - Crashing bug when parsing fa.gz files - Crashing bug with tiny Graph files - Bug when loading FASTA files with short lines - Corrected snp_view.pl script to write reverse strand reads in snp_view_reads file - Corrected snp_view.pl script to behave better near the edges of contigs - Updated observed_insert_length to compute the standard deviation of the set - Corrected observed_insert_length script so that it does not crash on empty libraries - Crashing bug when providing an odd number of paired reads - Mapping bug of reads during tour bus correction * Replaced the UNRELEASED tag by ‘unstable’ in debian/changelog as 0.7.50-1 was really uploaded and accepted by the archive. velvet (0.7.50-1) unstable; urgency=low * New upstream release: V 0.7.49 - Added the optional output of unused reads - Added David Studholme's FastA -> AGP script V 0.7.50 - Added the extractContigReads script - Updated the FastA -> AGP script - Added the observed-insert-length script - Small parsing bug in simplified read import * Incremented Standards-Version in debian/control to reflect conformance with Policy 3.8.3 (no changes needed). velvet (0.7.48-1) unstable; urgency=low * New upstream release: - Accelerated concatenation (pre-graph and graph) - Unlimited contig size - Bug in parsing FASTA files with very long lines - Parsing bug in snp_view.pl script velvet (0.7.47-1) unstable; urgency=low * New upstream release correcting bugs and enhancing documentation. * Multi-Arch support (‘foreign’) in debian/control. * Corrected debian/install to avoid ugly ‘contrib/contrib’ location. velvet (0.7.44-1) unstable; urgency=low * New upstream release. * Added bibliographic information in BibTeX format in debian/references. * debian/rules: touch zlib to avoid third-party zlib to be built. * Removed ‘debian/patches/20_external_zlib.patch’. Passing apropriate variables in debian/rules is enough to build dynamically on Debian's zlib. * Removed the quilt patch system (debian/control, debian/README.source debian/rules). * Incremented Standards-Version in debian/control to reflect conformance with Policy 3.8.2 (no changes needed). * Corrected the installation of files that were moved from the ‘third-party’ directory to the ‘contrib’ directory. * Experimentation on debian/copyright. velvet (0.7.37-1) unstable; urgency=low * New upstream release. - Small formatting change to error messages - K > 31 now possible - --help option corrected for velvetg - Acceleration of k-mer operations (comparable to 64bit int performance) - Fixed variable lengths - Reordered struct declaration for more efficent memory alignment * debian/rules: - Restored manpage generation for velvetg*. - Added forgotten CFLAGS for the colorspace building. -- Ubuntu Archive Auto-Sync <email address hidden> Fri, 06 Nov 2009 10:39:31 +0000
Upload details
- Uploaded by:
- Ubuntu Archive Auto-Sync
- Uploaded to:
- Lucid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- science
- Urgency:
- Low Urgency
See full publishing history Publishing
Series | Published | Component | Section |
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Downloads
File | Size | SHA-256 Checksum |
---|---|---|
velvet_0.7.55.orig.tar.gz | 3.3 MiB | 315331f418c2de89c6c871cea3759d947320c0adbc763fea290ec78ece69b614 |
velvet_0.7.55-1.diff.gz | 5.7 KiB | 494017c792e54d4a1524d9ad243d14b4bcdf063f2bf933d3c8a1cd61650e9789 |
velvet_0.7.55-1.dsc | 1.3 KiB | 85c436a44126d2175e060e3a41a91854ea09027e1d4952aa1723f76860d1de57 |
Available diffs
- diff from 0.7.34-1 to 0.7.55-1 (93.3 KiB)
Binary packages built by this source
- velvet: No summary available for velvet in ubuntu lucid.
No description available for velvet in ubuntu lucid.
- velvet-example: No summary available for velvet-example in ubuntu lucid.
No description available for velvet-example in ubuntu lucid.