Ubuntu
velvet package

velvet 1.2.10+dfsg-1 source package in Ubuntu

Changelog

velvet (1.2.10+dfsg-1) unstable; urgency=low


  * New upstream version (+adapted patch)
  * debian/watch: cope with +dfsg suffix (in addition to old ~nozlibcopy)
  * debian/get-orig-source:
     - Enable simple changing of suffix for repackaged source
     - Check for existence of enhanced uscan and use it if available for
       easier repackaging
  * debian/control:
     - cme fix dpkg-control
     - no explicit quilt Build-Depends (also removed from rules)
     - bumped python from Recommends to Depends because there are
       Python scripts installed in velvet/contrib
     - use anonscm in Vcs fields
  * debian/copyright:
    Add Files-Excluded to document what was removed from original source
  * rename debian/{docs,install} to debian/velvet.{docs,install} which
    is more safe in the case of multibinary package
  * debian/velvet.install: shuffle* files are in contrib directory now
  * debhelper 9 (control+compat) to enable hardening options
  * debian/rules: propagate hardening options
  * debian/copyright:
     - Files-Excluded: Exclude MAXOS internal files cruft from upstream archive
     - Adapt Source location
  * debian/README.source: Updated explanation for repackaging, droped some
    outdated information
  * debian/rules:
     - Do not try to rmdir nonexisting directory
     - Remove extra copies of GPL
  * debian/velvet-examples.install: use install instead of examples to move
    the examples into /usr/share/doc/velvet directly.  Also all contrib stuff
    was moved here to not bloat main velvet binary package with potentially
    unused stuff in /usr/share
  * debian/README.Debian: document move of contrib stuff

 -- Andreas Tille <email address hidden>  Thu, 01 Aug 2013 14:33:28 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
science
Urgency:
Low Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Trusty release universe science

Downloads

File Size SHA-256 Checksum
velvet_1.2.10+dfsg-1.dsc 1.4 KiB f15a457a0a62b89aaf05c676d067486dae01c60e8150bef446010019afc7ecd6
velvet_1.2.10+dfsg.orig.tar.xz 13.4 MiB af6575394704f4a817854bdf1df4d386a3bae030d028ddc6529d5b9dc91b1edc
velvet_1.2.10+dfsg-1.debian.tar.gz 9.3 KiB a7c6b70376841a17a8f4edf8948a9809e4dfb29457f52479c9dab930e26cc723

No changes file available.

Binary packages built by this source

velvet: Nucleic acid sequence assembler for very short reads

 Velvet is a de novo genomic assembler specially designed for short read
 sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and
 Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near
 Cambridge, in the United Kingdom.
 .
 Velvet currently takes in short read sequences, removes errors then produces
 high quality unique contigs. It then uses paired read information, if
 available, to retrieve the repeated areas between contigs.

velvet-example: Example data for the Velvet sequence assembler

 Velvet is a de novo genomic assembler specially designed for short read
 sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and
 Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near
 Cambridge, in the United Kingdom.
 .
 Velvet currently takes in short read sequences, removes errors then produces
 high quality unique contigs. It then uses paired read information, if
 available, to retrieve the repeated areas between contigs.
 .
 This package contains the example data distributed in the sources of Velvet,
 a de novo genomic assembler.