wise 2.4.1-17 source package in Ubuntu
Changelog
wise (2.4.1-17) unstable; urgency=medium
* debian/tests/control: explicitly depend on wise. This avoids that
‘sadt’ skips the test when wise-doc is not installed.
* debian/tests/run-unit-test: skip the first line of testman.pl, that
misses a proper shebang and trigger a failure.
* debian/control: shorten synopsis to less than 72 characters.
* Conforms with Policy 3.9.6.
-- Charles Plessy <email address hidden> Tue, 23 Sep 2014 20:14:47 +0900
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- science
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Xenial | release | universe | science |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| wise_2.4.1-17.dsc | 2.2 KiB | a498ff816c3fd5070d3059e7bf375d0bfed1ec818df9a3b7f7e0e5310ba0539d |
| wise_2.4.1.orig.tar.gz | 3.3 MiB | 0aec5e30739110783517a429606249fc6c5fd0d65171c1a6d79ecc5ff81d2935 |
| wise_2.4.1-17.debian.tar.xz | 21.4 KiB | 453105445db50772c7b28b5767225b848a7950ef1db3075882ab61253b78cccb |
Available diffs
- diff from 2.4.1-16 to 2.4.1-17 (1.1 KiB)
No changes file available.
Binary packages built by this source
- wise: No summary available for wise in ubuntu vivid.
No description available for wise in ubuntu vivid.
- wise-data: No summary available for wise-data in ubuntu yakkety.
No description available for wise-data in ubuntu yakkety.
- wise-dbgsym: debug symbols for package wise
Wise2 is a package focused on comparisons of biopolymers, commonly DNA
and protein sequences. There are many other packages which do
this, probably the best known being BLAST package (from NCBI) and the
Fasta package (from Bill Pearson). There are other packages, such as
the HMMER package (Sean Eddy) or SAM package (UC Santa Cruz) focused
on hidden Markov models (HMMs) of biopolymers.
.
Wise2's particular forte is the comparison of DNA sequence at the level
of its protein translation. This comparison allows the simultaneous
prediction of say gene structure with homology based alignment.
.
Wise2 also contains other algorithms, such as the venerable Smith-Waterman
algorithm, or more modern ones such as Stephen Altschul's generalised
gap penalties, or even experimental ones developed in house, such as
dba. The development of these algorithms is due to the ease of developing
such algorithms in the environment used by Wise2.
.
Wise2 has also been written with an eye for reuse and maintainability.
Although it is a pure C package you can access its functionality
directly in Perl. Parts of the package (or the entire package) can
be used by other C or C++ programs without namespace clashes as all
externally linked variables have the unique identifier Wise2 prepended.
- wise-doc: No summary available for wise-doc in ubuntu vivid.
No description available for wise-doc in ubuntu vivid.
