yanosim 0.1-5 source package in Ubuntu
Changelog
yanosim (0.1-5) unstable; urgency=medium * Team upload. * Fix watch file * Standards-Version: 4.6.1 (routine-update) -- Andreas Tille <email address hidden> Sat, 26 Nov 2022 06:36:36 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Noble | release | universe | misc | |
| Mantic | release | universe | misc | |
| Lunar | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| yanosim_0.1-5.dsc | 2.0 KiB | 61b2a860ba04527661e2232a14ec6174e4914b405bbfad75124d4aeb0e410b98 |
| yanosim_0.1.orig.tar.gz | 7.8 KiB | cd6d732c3869f97bb0b69de13861a887e81b9c25d93c007ad9c8c4d6a29d462a |
| yanosim_0.1-5.debian.tar.xz | 3.1 KiB | 9128d382eb481376279a8de3165d59a200ea8699f2b0ba36fc76a21ac382de54 |
Available diffs
- diff from 0.1-4 to 0.1-5 (626 bytes)
No changes file available.
Binary packages built by this source
- yanosim: read simulator nanopore DRS datasets
Yanosim has three options:
.
1. yanosim model:
Creates an model of mismatches, insertions and deletions
based on an alignment of nanopore DRS reads to a
reference. Reads should be aligned to a transcriptome
i.e. without spliced alignment, using minimap2. They
should have the cs tag.
2. yanosim quantify:
Quantify the number of reads mapping to each
transcript in a reference, so that the right number
of reads can be simulated.
3. yanosim simulate:
Given a model created using yanosim model, and
per-transcript read counts created using yanosim
simulate, simulate error-prone long-reads from the
given fasta file.
