Analysis of structural and functional neuroimaging data

 NiPy is a Python-based framework for the analysis of structural and
 functional neuroimaging data. It provides functionality for
  - General linear model (GLM) statistical analysis
  - Combined slice time correction and motion correction
  - General image registration routines with flexible cost functions,
    optimizers and re-sampling schemes
  - Image segmentation
  - Basic visualization of results in 2D and 3D
  - Basic time series diagnostics
  - Clustering and activation pattern analysis across subjects
  - Reproducibility analysis for group studies