trnascan-se binary package in Ubuntu Bionic amd64
tRNAscan-SE identifies 99-100% of transfer RNA genes in DNA sequence while
giving less than one false positive per 15 gigabases. Two previously described
tRNA detection programs are used as fast, first-pass prefilters to identify
candidate tRNAs, which are then analyzed by a highly selective tRNA covariance
model. This work represents a practical application of RNA covariance models,
which are general, probabilistic secondary structure profiles based on
stochastic context-free grammars. tRNAscan-SE searches at ~ 30 000 bp/s.
Additional extensions to tRNAscan-SE detect unusual tRNA homologues such as
selenocysteine tRNAs, tRNA-derived repetitive elements and tRNA pseudogenes.
Publishing history
| Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
|---|---|---|---|---|---|---|---|---|---|
| 2018-07-12 00:10:10 UTC | Deleted | Ubuntu Bionic amd64 | proposed | multiverse | science | Optional | 2.0.0-1 | ||
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| 2017-10-24 21:55:24 UTC | Published | Ubuntu Bionic amd64 | release | multiverse | science | Optional | 1.3.1-1 | ||
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