trinityrnaseq 2.6.6+dfsg-4 (amd64 binary) in ubuntu disco
Trinity represents a novel method for the efficient and robust de novo
reconstruction of transcriptomes from RNA-seq data. Trinity combines three
independent software modules: Inchworm, Chrysalis, and Butterfly, applied
sequentially to process large volumes of RNA-seq reads. Trinity partitions
the sequence data into many individual de Bruijn graphs, each representing the
transcriptional complexity at a given gene or locus, and then processes
each graph independently to extract full-length splicing isoforms and to tease
apart transcripts derived from paralogous genes.
Details
- Package version:
- 2.6.6+dfsg-4
- Status:
- Superseded
- Component:
- universe
- Priority:
- Optional
Downloadable files
amd64 build of trinityrnaseq 2.6.6+dfsg-4 in ubuntu disco PROPOSED produced
these files:
- trinityrnaseq_2.6.6+dfsg-4_amd64.deb (1.7 MiB)
Package relationships
- Depends on:
- berkeley-express
- bowtie
- bowtie2
- curl
- default-jre-headless
- jaligner
- jellyfish
- libc6 (>= 2.27)
- libcommons-collections4-java
- libgcc1 (>= 1:3.0)
- libgetopt-java
- libgomp1 (>= 4.9)
- libhts2 (>= 1.0)
- libjung-free-java
- libstdc++6 (>= 5.2)
- libwww-perl
- parafly
- perl
- python3-numpy
- r-base-core
- r-bioc-qvalue
- r-cran-cluster
- rsem
- salmon
- samtools
- transdecoder
- trimmomatic
- zlib1g (>= 1:1.1.4)
- Suggests:
- Recommends: