Binary package “gubbins” in ubuntu focal
phylogenetic analysis of genome sequences
Gubbins supports rapid phylogenetic analysis of large samples of
recombinant bacterial whole genome sequences.
.
Gubbins (Genealogies Unbiased By recomBinations In Nucleotide
Sequences) is an algorithm that iteratively identifies loci containing
elevated densities of base substitutions while concurrently constructing
a phylogeny based on the putative point mutations outside of these
regions. Simulations demonstrate the algorithm generates highly accurate
reconstructions under realistic models of short-term bacterial
evolution, and can be run in only a few hours on alignments of hundreds
of bacterial genome sequences.
Source package
Published versions
- gubbins 2.3.5-1 in amd64 (Proposed)
- gubbins 2.3.5-1 in amd64 (Release)
- gubbins 2.3.5-1 in arm64 (Proposed)
- gubbins 2.3.5-1 in arm64 (Release)
- gubbins 2.3.5-1 in armhf (Proposed)
- gubbins 2.3.5-1 in armhf (Release)
- gubbins 2.3.5-1 in ppc64el (Proposed)
- gubbins 2.3.5-1 in ppc64el (Release)
- gubbins 2.3.5-1 in s390x (Proposed)
- gubbins 2.3.5-1 in s390x (Release)