ea-utils binary package in Ubuntu Focal amd64

 Ea-utils provides a set of command-line tools for processing biological
 sequencing data, barcode demultiplexing, adapter trimming, etc.
 .
 Primarily written to support an Illumina based pipeline - but should work with
 any FASTQs.
 .
 Main Tools are:
 .
  * fastq-mcf
 Scans a sequence file for adapters, and, based on a log-scaled threshold,
 determines a set of clipping parameters and performs clipping. Also does
 skewing detection and quality filtering.
  * fastq-multx
 Demultiplexes a fastq. Capable of auto-determining barcode id's based on a
 master set fields. Keeps multiple reads in-sync during demultiplexing. Can
 verify that the reads are in-sync as well, and fail if they're not.
  * fastq-join
 Similar to audy's stitch program, but in C, more efficient and supports some
 automatic benchmarking and tuning. It uses the same "squared distance for
 anchored alignment" as other tools.
  * varcall
 Takes a pileup and calculates variants in a more easily parameterized manner
 than some other tools.

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2020-03-22 20:55:38 UTC Published Ubuntu Focal amd64 release universe science Optional 1.1.2+dfsg-5build1
  • Published
  • Copied from ubuntu focal-proposed amd64 in Primary Archive for Ubuntu
  Deleted Ubuntu Focal amd64 proposed universe science Optional 1.1.2+dfsg-5build1
  • Removal requested .
  • Deleted by Ubuntu Archive Robot

    moved to Release

  • Published
  2020-03-22 20:57:14 UTC Superseded Ubuntu Focal amd64 release universe science Optional 1.1.2+dfsg-5
  • Removed from disk .
  • Removal requested .
  • Superseded by amd64 build of ea-utils 1.1.2+dfsg-5build1 in ubuntu focal PROPOSED
  • Published
  • Copied from ubuntu cosmic-proposed amd64 in Primary Archive for Ubuntu