gubbins binary package in Ubuntu Focal amd64
Gubbins supports rapid phylogenetic analysis of large samples of
recombinant bacterial whole genome sequences.
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Gubbins (Genealogies Unbiased By recomBinations In Nucleotide
Sequences) is an algorithm that iteratively identifies loci containing
elevated densities of base substitutions while concurrently constructing
a phylogeny based on the putative point mutations outside of these
regions. Simulations demonstrate the algorithm generates highly accurate
reconstructions under realistic models of short-term bacterial
evolution, and can be run in only a few hours on alignments of hundreds
of bacterial genome sequences.
Publishing history
Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
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2020-04-30 00:10:10 UTC | Deleted | Ubuntu Focal amd64 | proposed | universe | science | Optional | 2.4.1-1 | ||
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2020-01-22 17:18:41 UTC | Superseded | Ubuntu Focal amd64 | proposed | universe | science | Optional | 2.4.0-2 | ||
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2020-01-09 05:24:04 UTC | Superseded | Ubuntu Focal amd64 | proposed | universe | science | Optional | 2.4.0-1 | ||
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2019-12-21 08:18:12 UTC | Published | Ubuntu Focal amd64 | release | universe | science | Optional | 2.3.5-1 | ||
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Deleted | Ubuntu Focal amd64 | proposed | universe | science | Optional | 2.3.5-1 | |||
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2019-12-21 08:18:16 UTC | Superseded | Ubuntu Focal amd64 | release | universe | science | Optional | 2.3.4-1 | ||
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