libjellyfish-perl binary package in Ubuntu Focal amd64
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
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JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
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This package contains the Perl bindings of jellyfish.
Publishing history
Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
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2020-02-20 17:38:27 UTC | Published | Ubuntu Focal amd64 | release | universe | perl | Optional | 2.3.0-4build1 | ||
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Deleted | Ubuntu Focal amd64 | proposed | universe | perl | Optional | 2.3.0-4build1 | |||
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2020-02-20 17:39:42 UTC | Superseded | Ubuntu Focal amd64 | release | universe | perl | Optional | 2.3.0-4 | ||
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2020-02-21 18:10:14 UTC | Deleted | Ubuntu Focal amd64 | proposed | universe | perl | Optional | 2.3.0-4 | ||
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2019-12-23 10:44:27 UTC | Superseded | Ubuntu Focal amd64 | proposed | universe | perl | Optional | 2.3.0-3 | ||
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2020-02-12 17:08:37 UTC | Superseded | Ubuntu Focal amd64 | release | universe | perl | Optional | 2.3.0-2 | ||
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2020-02-13 18:10:10 UTC | Deleted | Ubuntu Focal amd64 | proposed | universe | perl | Optional | 2.3.0-2 | ||
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2019-11-02 04:43:52 UTC | Superseded | Ubuntu Focal amd64 | release | universe | perl | Optional | 2.2.10-2build1 | ||
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2019-11-03 06:10:10 UTC | Deleted | Ubuntu Focal amd64 | proposed | universe | perl | Optional | 2.2.10-2build1 | ||
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2019-10-24 17:28:36 UTC | Superseded | Ubuntu Focal amd64 | release | universe | perl | Optional | 2.2.10-2 | ||
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