python3-pyfaidx binary package in Ubuntu Focal amd64
Samtools provides a function "faidx" (FAsta InDeX), which creates a
small flat index file ".fai" allowing for fast random access to any
subsequence in the indexed FASTA file, while loading a minimal amount of
the file in to memory. This Python module implements pure Python classes
for indexing, retrieval, and in-place modification of FASTA files using
a samtools compatible index. The pyfaidx module is API compatible with
the pygr seqdb module. A command-line script "faidx" is installed
alongside the pyfaidx module, and facilitates complex manipulation of
FASTA files without any programming knowledge.
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This package provides the Python 3 modules to access fasta files.
Publishing history
Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
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2020-01-29 07:53:12 UTC | Published | Ubuntu Focal amd64 | release | universe | python | Optional | 0.5.8-2 | ||
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Deleted | Ubuntu Focal amd64 | proposed | universe | python | Optional | 0.5.8-2 | |||
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2020-01-29 07:53:18 UTC | Superseded | Ubuntu Focal amd64 | release | universe | python | Optional | 0.5.5.2-2 | ||
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2020-01-30 12:10:13 UTC | Deleted | Ubuntu Focal amd64 | proposed | universe | python | Optional | 0.5.5.2-2 | ||
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2019-10-29 07:53:28 UTC | Superseded | Ubuntu Focal amd64 | release | universe | python | Optional | 0.5.5.2-1 | ||
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