smalt binary package in Ubuntu Focal amd64

 SMALT efficiently aligns DNA sequencing reads with a reference genome.
 Reads from a wide range of sequencing platforms, for example Illumina,
 Roche-454, Ion Torrent, PacBio or ABI-Sanger, can be processed including
 paired reads.
 .
 The software employs a perfect hash index of short words (< 20
 nucleotides long), sampled at equidistant steps along the genomic
 reference sequences.
 .
 For each read, potentially matching segments in the reference are
 identified from seed matches in the index and subsequently aligned with
 the read using a banded Smith-Waterman algorithm.
 .
 The best gapped alignments of each read is reported including a score
 for the reliability of the best mapping. The user can adjust the
 trade-off between sensitivity and speed by tuning the length and spacing
 of the hashed words.
 .
 A mode for the detection of split (chimeric) reads is provided.
 Multi-threaded program execution is supported.

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2020-01-05 02:08:11 UTC Published Ubuntu Focal amd64 release universe science Optional 0.7.6-9
  • Published
  • Copied from ubuntu focal-proposed amd64 in Primary Archive for Ubuntu
  Deleted Ubuntu Focal amd64 proposed universe science Optional 0.7.6-9
  • Removal requested .
  • Deleted by Ubuntu Archive Robot

    moved to Release

  • Published
  2020-01-05 02:08:17 UTC Superseded Ubuntu Focal amd64 release universe science Optional 0.7.6-8
  • Removed from disk .
  • Removal requested .
  • Superseded by amd64 build of smalt 0.7.6-9 in ubuntu focal PROPOSED
  • Published
  • Copied from ubuntu disco-proposed amd64 in Primary Archive for Ubuntu

Source package