smalt binary package in Ubuntu Focal amd64

 SMALT efficiently aligns DNA sequencing reads with a reference genome.
 Reads from a wide range of sequencing platforms, for example Illumina,
 Roche-454, Ion Torrent, PacBio or ABI-Sanger, can be processed including
 paired reads.
 The software employs a perfect hash index of short words (< 20
 nucleotides long), sampled at equidistant steps along the genomic
 reference sequences.
 For each read, potentially matching segments in the reference are
 identified from seed matches in the index and subsequently aligned with
 the read using a banded Smith-Waterman algorithm.
 The best gapped alignments of each read is reported including a score
 for the reliability of the best mapping. The user can adjust the
 trade-off between sensitivity and speed by tuning the length and spacing
 of the hashed words.
 A mode for the detection of split (chimeric) reads is provided.
 Multi-threaded program execution is supported.

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2020-01-05 02:08:11 UTC Published Ubuntu Focal amd64 release universe science Optional 0.7.6-9
  • Published
  • Copied from ubuntu focal-proposed amd64 in Primary Archive for Ubuntu
  Deleted Ubuntu Focal amd64 proposed universe science Optional 0.7.6-9
  • Removal requested .
  • Deleted by Ubuntu Archive Robot

    moved to Release

  • Published
  2020-01-05 02:08:17 UTC Superseded Ubuntu Focal amd64 release universe science Optional 0.7.6-8
  • Removed from disk .
  • Removal requested .
  • Superseded by amd64 build of smalt 0.7.6-9 in ubuntu focal PROPOSED
  • Published
  • Copied from ubuntu disco-proposed amd64 in Primary Archive for Ubuntu

Source package