topp binary package in Ubuntu Focal amd64
TOPP (the OpenMS proteomic pipeline) is a pipeline for the analysis
of HPLC/MS data. It consists of a set of numerous small applications
that can be chained together to create analysis pipelines tailored
for a specific problem. The applications make use of the libopenms
library. Some examples of these applications are :
.
- TOPPView: A viewer for mass spectrometry data.
- TOPPAS: An assistant for GUI-driven TOPP workflow design.
- DTAExtractor: Extracts spectra of an MS run file to several
files in DTA format.
- FileConverter: Converts between different MS file formats.
- FileFilter: Extracts or manipulates portions of data from peak,
feature or consensus feature files.
- SpectraMerger: Merges spectra from an LC/MS map, either by
precursor or by RT blocks.
- BaselineFilter: Removes the baseline from profile spectra using a
top-hat filter.
- InternalCalibra
- PTModel: Trains a model for the prediction of proteotypic
peptides from a training set.
- RTPredict: Predicts retention times for peptides using a model
trained by RTModel.
- ExecutePipeline: Executes workflows created by TOPPAS.
Publishing history
Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
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2020-03-24 07:33:17 UTC | Published | Ubuntu Focal amd64 | release | universe | science | Optional | 2.4.0-real-1ubuntu4 | ||
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Deleted | Ubuntu Focal amd64 | proposed | universe | science | Optional | 2.4.0-real-1ubuntu4 | |||
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2020-03-24 07:33:57 UTC | Superseded | Ubuntu Focal amd64 | release | universe | science | Optional | 2.4.0-real-1ubuntu3 | ||
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2020-03-25 12:10:11 UTC | Deleted | Ubuntu Focal amd64 | proposed | universe | science | Optional | 2.4.0-real-1ubuntu3 | ||
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2020-03-04 05:13:20 UTC | Superseded | Ubuntu Focal amd64 | release | universe | science | Optional | 2.4.0-real-1ubuntu2 | ||
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2020-03-05 06:10:15 UTC | Deleted | Ubuntu Focal amd64 | proposed | universe | science | Optional | 2.4.0-real-1ubuntu2 | ||
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2020-02-27 11:15:54 UTC | Superseded | Ubuntu Focal amd64 | release | universe | science | Optional | 2.4.0-real-1build1 | ||
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