plasmidseeker binary package in Ubuntu Focal arm64
PlasmidSeeker is a k-mer based program for the identification of known
plasmids from bacterial whole genome sequencing reads.
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PlasmidSeeker that enables the detection of plasmids from bacterial WGS
data without read assembly. The PlasmidSeeker algorithm is based on
k-mers and uses k-mer abundance to distinguish between plasmid and
bacterial sequences. The performance of PlasmidSeeker was tested on a set
of simulated and real bacterial WGS samples, resulting in 100%
sensitivity and 99.98% specificity.
Publishing history
| Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
|---|---|---|---|---|---|---|---|---|---|
| 2019-10-18 09:15:30 UTC | Published | Ubuntu Focal arm64 | release | universe | science | Optional | 1.0+dfsg-1 | ||
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