rsem binary package in Ubuntu Focal arm64

 RSEM is a software package for estimating gene and isoform expression
 levels from RNA-Seq data. The RSEM package provides an user-friendly
 interface, supports threads for parallel computation of the EM
 algorithm, single-end and paired-end read data, quality scores,
 variable-length reads and RSPD estimation. In addition, it provides
 posterior mean and 95% credibility interval estimates for expression
 levels. For visualization, It can generate BAM and Wiggle files in both
 transcript-coordinate and genomic-coordinate. Genomic-coordinate files
 can be visualized by both UCSC Genome browser and Broad Institute’s
 Integrative Genomics Viewer (IGV). Transcript-coordinate files can be
 visualized by IGV. RSEM also has its own scripts to generate transcript
 read depth plots in pdf format. The unique feature of RSEM is, the read
 depth plots can be stacked, with read depth contributed to unique reads
 shown in black and contributed to multi-reads shown in red. In addition,
 models learned from data can also be visualized. Last but not least,
 RSEM contains a simulator.

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2020-02-18 03:43:24 UTC Published Ubuntu Focal arm64 release universe science Optional 1.3.3+dfsg-1
  • Published
  • Copied from ubuntu focal-proposed arm64 in Primary Archive for Ubuntu
  Deleted Ubuntu Focal arm64 proposed universe science Optional 1.3.3+dfsg-1
  • Removal requested .
  • Deleted by Ubuntu Archive Robot

    moved to Release

  • Published
  2020-02-18 03:43:36 UTC Superseded Ubuntu Focal arm64 release universe science Optional 1.3.2+dfsg-2build1
  • Removed from disk .
  • Removal requested .
  • Superseded by arm64 build of rsem 1.3.3+dfsg-1 in ubuntu focal PROPOSED
  • Published
  • Copied from ubuntu focal-proposed arm64 in Primary Archive for Ubuntu
  2020-02-19 06:10:10 UTC Deleted Ubuntu Focal arm64 proposed universe science Optional 1.3.2+dfsg-2build1
  • Removed from disk .
  • Removal requested .
  • Deleted by Ubuntu Archive Robot

    moved to Release

  • Published
  2020-02-12 17:08:37 UTC Superseded Ubuntu Focal arm64 release universe science Optional 1.3.2+dfsg-2
  • Removed from disk .
  • Removal requested .
  • Superseded by arm64 build of rsem 1.3.2+dfsg-2build1 in ubuntu focal PROPOSED
  • Published
  • Copied from ubuntu focal-proposed arm64 in Primary Archive for Ubuntu
  2020-02-13 18:10:10 UTC Deleted Ubuntu Focal arm64 proposed universe science Optional 1.3.2+dfsg-2
  • Removed from disk .
  • Removal requested .
  • Deleted by Ubuntu Archive Robot

    moved to Release

  • Published
  2019-10-29 05:53:29 UTC Superseded Ubuntu Focal arm64 release universe science Optional 1.3.2+dfsg-1
  • Removed from disk .
  • Removal requested .
  • Superseded by arm64 build of rsem 1.3.2+dfsg-2 in ubuntu focal PROPOSED
  • Published
  • Copied from ubuntu eoan-proposed arm64 in Primary Archive for Ubuntu

Source package