libbio-db-gff-perl binary package in Ubuntu Focal i386
Bio::DB::GFF provides fast indexed access to a sequence annotation database.
It supports multiple database types (ACeDB, relational), and multiple schemas
through a system of adaptors and aggregators.
.
The following operations are supported by this module:
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- retrieving a segment of sequence based on the ID of a landmark
.
- retrieving the DNA from that segment
.
- finding all annotations that overlap with the segment
.
- finding all annotations that are completely contained within the
segment
.
- retrieving all annotations of a particular type, either within a
segment, or globally
.
- conversion from absolute to relative coordinates and back again,
using any arbitrary landmark for the relative coordinates
.
- using a sequence segment to create new segments based on relative
offsets
Publishing history
Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
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2020-01-14 02:23:21 UTC | Published | Ubuntu Focal i386 | release | universe | perl | Optional | 1.7.4-1 | ||
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Deleted | Ubuntu Focal i386 | proposed | universe | perl | Optional | 1.7.4-1 | |||
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2020-01-14 02:23:38 UTC | Superseded | Ubuntu Focal i386 | release | universe | perl | Optional | 1.7.3-2 | ||
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2020-01-15 06:10:09 UTC | Deleted | Ubuntu Focal i386 | proposed | universe | perl | Optional | 1.7.3-2 | ||
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