-
sra-sdk (2.10.7+dfsg-1) unstable; urgency=medium
* New upstream version
* Trim trailing whitespace.
* Set field Upstream-Contact in debian/copyright.
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
Repository-Browse.
* Remove obsolete field Contact from debian/upstream/metadata (already present
in machine-readable debian/copyright).
-- Aaron M. Ucko <email address hidden> Tue, 02 Jun 2020 21:47:38 -0400
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sra-sdk (2.10.6+dfsg-5) unstable; urgency=medium
* debian/patches/reenable_legacy_schema_in_sra_load.patch: New patch to
make use of ncbi-vdb's new SRAUseLegacyDefaultSchema toggle,
unbreaking tools/sra-load (fastq-load et al.) (Closes: #961347.)
* debian/control: Ensure that this toggle is available at build time and
at runtime.
-- Aaron M. Ucko <email address hidden> Mon, 25 May 2020 22:45:07 -0400
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sra-sdk (2.10.6+dfsg-4) unstable; urgency=medium
* Account for new sratools setup. (Closes: #961256.)
- debian/rules: Rework deversioning logic to account for sratools and
*-orig.* while still keeping hardcoding to a minimum; formally
supply a hardcoded but originally random standard installation ID in
a new /etc/ncbi/debian.kfg.
- debian/patches/use_unversioned_tools.patch (new): Have sratools look
for executable names without version extensions.
-- Aaron M. Ucko <email address hidden> Fri, 22 May 2020 09:25:13 -0400
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sra-sdk (2.10.6+dfsg-3) unstable; urgency=medium
* Also exclude sra-pileup check_skiplist test per network access.
-- Aaron M. Ucko <email address hidden> Thu, 21 May 2020 10:17:04 -0400
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sra-sdk (2.10.6+dfsg-2) unstable; urgency=medium
* drop_tests.patch: Exclude kar (needs network access); retire
test-vdb-config exclusion with (fake)root out of the picture.
Update description accordingly.
* ignore_failing_test_for_the_moment_FIXME.patch: Resync.
-- Aaron M. Ucko <email address hidden> Thu, 21 May 2020 09:03:42 -0400
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sra-sdk (2.10.6+dfsg-1) unstable; urgency=medium
[ Steffen Moeller ]
* New upstream version
* debhelper-compat 12
* Standards-Version: 4.4.1
* ncbi-vdb needs to appear as 2.10.2 in Debian with its mbedtls wrapper
fixed to avoid a link error in this package.
[ Michael R. Crusoe ]
* Convert to Python3. Closes: #943231
* Standards-Version: 4.5.0 (routine-update)
[ Aaron M. Ucko ]
* Correct accidental cutover to ncbi-vdb 2.10.5(+dfsg); further update to
2.10.6.
* Revert patch updates contingent on spurious cutover to ncbi-vdb.
* Refresh patches for real.
- Generally standardize on -pab format.
- hardening.patch: Rebase C(P)FLAGS, which no longer request extensions.
- python3: Drop makefile tweaks obsoleted by new PYTHON abstraction.
* Help validate-names4.c find ncbi-vdb headers that are normally internal.
To wit, build-depend on libncbi-vdb-dev (>= 2.10.6+dfsg-2~) to ensure
these headers are installed sanely, and patch validate-names4.c
accordingly in a new patch use_exposed_headers.patch. In conjunction
with taking the latest upstream, closes: #961049.
* Specify configuration location by passing KONFIG_DIR. (The makefile
patch previously in use relied on [fake]root.)
* Fix usage of default Debian build flags: Use buildflags.mk with
appropriate _APPEND settings, and tweak hardening.patch to add
DEB_*FLAGS to the front rather than the end (so as to keep upstream's
preferred optimization level).
* Preclean more fully to allow for consecutive builds.
* List (wildcard) currently uninstalled files in debian/not-installed.
* Correct logic for identifying all failing tests when there are any.
* Secure URI in copyright format (routine-update)
* Respect DEB_BUILD_OPTIONS in override_dh_auto_test target (routine-
update)
* Remove trailing whitespace in debian/changelog (routine-update)
* Remove trailing whitespace in debian/rules (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Add myself to uploaders.
-- Aaron M. Ucko <email address hidden> Wed, 20 May 2020 22:15:19 -0400
