r-bioc-multtest 2.44.0-1build1 (arm64 binary) in ubuntu groovy
Non-parametric bootstrap and permutation resampling-based multiple
testing procedures (including empirical Bayes methods) for controlling
the family-wise error rate (FWER), generalized family-wise error rate
(gFWER), tail probability of the proportion of false positives (TPPFP),
and false discovery rate (FDR). Several choices of bootstrap-based null
distribution are implemented (centered, centered and scaled,
quantile-
Tests based on a variety of t- and F-statistics (including t-statistics
based on regression parameters from linear and survival models as well
as those based on correlation parameters) are included. When probing
hypotheses with t-statistics, users may also select a potentially faster
null distribution which is multivariate normal with mean zero and
variance covariance matrix derived from the vector influence function.
Results are reported in terms of adjusted p-values, confidence regions
and test statistic cutoffs. The procedures are directly applicable to
identifying differentially expressed genes in DNA microarray
experiments.
Details
- Package version:
- 2.44.0-1build1
- Status:
- Obsolete
- Component:
- universe
- Priority:
- Optional
Downloadable files
- r-bioc-multtest_2.44.0-1build1_arm64.deb (820.9 KiB)
Package relationships
- Depends on:
- libc6 (>= 2.29)
- r-api-4.0
- r-api-bioc-3.11
- r-base-core (>= 4.0.0.20200528-1)
- r-bioc-biobase
- r-bioc-biocgenerics
- r-cran-mass
- r-cran-survival
- Suggests: