clustalw 1.83-3 (powerpc binary) in ubuntu hardy

 This program performs an alignment of multiple nucleotide or amino
 acid sequences. It recognizes the format of input sequences and whether
 the sequences are nucleic acid (DNA/RNA) or amino acid (proteins). The
 output format may be selected from in various formats for multiple alignments
 such as Phylip or FASTA. ClustalW is very well accepted. An alternative,
 particularly for fragmented sequences, may be
 T-Coffee (http://www.ch.embnet.org/software/TCoffee.html)
 DIALIGN (http://dialign.gobics.de/)
 or one of the other many algorithms as summarised on
 http://www.techfak.uni-bielefeld.de/bcd/Curric/MulAli/welcome.html.
 .
 The output of ClustalW can be edited manually but preferably with an alignment
 editor like seaview or within its companion ClustalX.
 When building a model from your alignment, this can be applied for improved
 database searches. The debian package hmmer creates such in form of an HMM.
 .
  URL: ftp://ftp-igbmc.u-strasbg.fr/pub/ClustalW/
  URL: ftp://ftp.ebi.ac.uk/pub/software/unix/clustalw/