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bedtools (2.30.0+dfsg-1) unstable; urgency=medium
[ Étienne Mollier ]
* Team upload.
* New upstream version 2.30.0+dfsg.
* Refresh 2to3.patch and hardening patch.
* Remove test related patches, 32-bit-fixes.patch and spelling patch;
applied upstream.
* Do not include htsutil as a side test program in bedtools anymore;
the test tool is inlined as subcommand to reduce memory footprint.
[ John Marshall ]
* Add htsutil patch to implement the bedtools htsutil subcommand.
[ Étienne Mollier ]
* d/rules: set $htsutil to use the bedtools htsutil subcommand.
* d/t/run-unit-test: use the bedtools htsutil subcommand.
-- Étienne Mollier <email address hidden> Wed, 27 Jan 2021 17:26:26 +0100
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bedtools (2.29.2+dfsg-6) unstable; urgency=medium
* Team upload.
* Repair broken link in run-unit-test script; fixes autopkgtest regression.
-- Étienne Mollier <email address hidden> Sun, 17 Jan 2021 12:11:39 +0100
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bedtools (2.29.2+dfsg-5) unstable; urgency=medium
* Delete standard debian/gbp.conf
* Revert deletion of test binary htsutil since it is needed to replace
samtools that's not working any more for this purpose
* Move htsutil tool to bedtools package
Closes: #978679
-- Andreas Tille <email address hidden> Mon, 04 Jan 2021 13:01:58 +0100
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bedtools (2.29.2+dfsg-4) unstable; urgency=medium
[ Michael R. Crusoe ]
* Team upload.
* Remove the need for samtools via patch from upstream.
* Include patch from Bernhard Übelacker to fix 32-bit builds. TODO: the
autopkgtests do not yet pass on i386 (and likely neither on other 32-bit
archs).
Closes: #955403
* debhelper-compat 13 (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
[ Andreas Tille ]
* Fix permissions of .sam files
* Delete test binary to make sure it will not be installed
* DEP3
* Standards-Version: 4.5.1 (routine-update)
-- Andreas Tille <email address hidden> Sun, 20 Dec 2020 19:03:35 +0100
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bedtools (2.29.2+dfsg-3build2) groovy; urgency=medium
* No-change rebuild because 2.29.2+dfsg-3(build1) was published in Ubuntu
before.
-- Logan Rosen <email address hidden> Sat, 09 May 2020 17:12:23 -0400