parallel-fastq-dump 0.6.6-3 (amd64 binary) in ubuntu hirsute
NCBI fastq-dump can be very slow sometimes, even if you have the
resources (network, IO, CPU) to go faster, even if you already
downloaded the sra file (see the protip below). This tool speeds up the
process by dividing the work into multiple threads.
.
This is possible because fastq-dump have options (-N and -X) to query
specific ranges of the sra file, this tool works by dividing the work
into the requested number of threads, running multiple fastq-dump in
parallel and concatenating the results back together, as if you had just
executed a plain fastq-dump call.
Details
- Package version:
- 0.6.6-3
- Status:
- Obsolete
- Component:
- universe
- Priority:
- Optional
Downloadable files
amd64 build of parallel-fastq-dump 0.6.6-3 in ubuntu hirsute PROPOSED produced
these files:
- parallel-fastq-dump_0.6.6-3_amd64.deb (4.7 KiB)
Package relationships
- Depends on: