r-bioc-purecn 1.20.0+dfsg-1 (amd64 binary) in ubuntu hirsute
This package estimates tumor purity, copy number, and loss of
heterozygosity (LOH), and classifies single nucleotide variants (SNVs) by
somatic status and clonality. PureCN is designed for targeted short read
sequencing data, integrates well with standard somatic variant detection
and copy number pipelines, and has support for tumor samples without
matching normal samples.
Details
- Package version:
- 1.20.0+dfsg-1
- Status:
- Superseded
- Component:
- universe
- Priority:
- Optional
Downloadable files
amd64 build of r-bioc-purecn 1.20.0+dfsg-1 in ubuntu hirsute PROPOSED produced
these files:
- r-bioc-purecn_1.20.0+dfsg-1_all.deb (5.1 MiB)
Package relationships
- Depends on:
- r-api-4.0
- r-api-bioc-3.12
- r-base-core (>= 4.0.3-1)
- r-bioc-biocgenerics
- r-bioc-biostrings
- r-bioc-dnacopy
- r-bioc-genomeinfodb
- r-bioc-genomicfeatures
- r-bioc-genomicranges (>= 1.20.3)
- r-bioc-iranges (>= 2.2.1)
- r-bioc-rhdf5
- r-bioc-rsamtools
- r-bioc-rtracklayer
- r-bioc-s4vectors
- r-bioc-summarizedexperiment
- r-bioc-variantannotation (>= 1.14.1)
- r-cran-data.table
- r-cran-futile.logger
- r-cran-ggplot2
- r-cran-gridextra
- r-cran-matrix
- r-cran-rcolorbrewer
- r-cran-vgam
- Recommends:
