r-other-chbutils 0.1+git20171026.a226cee-2 (arm64 binary) in ubuntu hirsute

 This GNU R package contains the following functions:
  chb_utils-package chb_utils
  annotate_df Annotate Dataframe containing Ensembl IDs with Gene
                        Symbols and Descriptions
  boxplotoutliers Cel file IDs of intensity boxplot outlier arrays (in
                        characters).
  chb_utils chb_utils
  col2rownames add a column to a dataframe consisting of the
                        current rownames
  convertIDs Get other Ids for genes in the same order
  create_report Create report of QC
  getTFpairs Get mouse TF-target pairs from opossum database
  get_biomart Get biomart annotation from id
  ggheatmap generate a heatmap + dendrograms, ggplot2 style
  ggheatmap.show Display a ggheatmap
  ggplotDispEsts Plot Dispersion Estimates - nicer ggplot version of
                        DESeq graph
  mds Plot MDS
  mdsplot.RGset MDS (MultiDimensional Scaling) Plots
  nuseoutliers Cel file IDs of intensity NUSE outlier arrays (in
                        characters).
  PCAplot.cds Pairwise Principal Component Analysis Plots of
                        CountDataSet objects
  PCAplot.eset Pairwise Principal Component Analysis Plots
                        Plots the differntially expressed genes on an MA
  plotDE plot, ggplot style If adjusted pvalues are present,
                        colors those that pass cutoff red
  plot_dendro ggplot based dendrogram plot
  print_enrichGO Clean and print results from enrichGO
                        Plots the pvalue quantiles against the uniform
  qqplot_JH distribution. If adjusted pvalues are present,
                        colors those that pass cutoff red
  rleoutliers Cel file IDs of intensity RLE outlier arrays (in
                        characters).
  row2colnames add a column to a dataframe consisting of the
                        current rownames
  runGO Run GO using clusterprofiler
  variance_by_component Plot PC importance
  volcano_density_plot Create volcano plot from log2FC and adjusted pvalues
                        data frame
  write_report Write report of QC

Details

Package version:
0.1+git20171026.a226cee-2
Source:
r-other-chbutils 0.1+git20171026.a226cee-2 source package in Ubuntu
Status:
Obsolete
Component:
universe
Priority:
Optional

Package relationships

Depends on: