r-other-chbutils 0.1+git20171026.a226cee-2 (arm64 binary) in ubuntu hirsute
This GNU R package contains the following functions:
chb_utils-package chb_utils
annotate_df Annotate Dataframe containing Ensembl IDs with Gene
boxplotoutliers Cel file IDs of intensity boxplot outlier arrays (in
chb_utils chb_utils
col2rownames add a column to a dataframe consisting of the
convertIDs Get other Ids for genes in the same order
create_report Create report of QC
getTFpairs Get mouse TF-target pairs from opossum database
get_biomart Get biomart annotation from id
ggheatmap generate a heatmap + dendrograms, ggplot2 style
ggheatmap.show Display a ggheatmap
ggplotDispEsts Plot Dispersion Estimates - nicer ggplot version of
mds Plot MDS
mdsplot.RGset MDS (MultiDimensional Scaling) Plots
nuseoutliers Cel file IDs of intensity NUSE outlier arrays (in
PCAplot.cds Pairwise Principal Component Analysis Plots of
PCAplot.eset Pairwise Principal Component Analysis Plots
plotDE plot, ggplot style If adjusted pvalues are present,
plot_dendro ggplot based dendrogram plot
print_enrichGO Clean and print results from enrichGO
qqplot_JH distribution. If adjusted pvalues are present,
rleoutliers Cel file IDs of intensity RLE outlier arrays (in
row2colnames add a column to a dataframe consisting of the
runGO Run GO using clusterprofiler
variance_
volcano_
write_report Write report of QC
Details
- Package version:
- 0.1+git20171026.a226cee-2
- Status:
- Obsolete
- Component:
- universe
- Priority:
- Optional
Downloadable files
Package relationships
- Depends on:
- r-api-4.0
- r-base-core (>= 4.0.2-1build1)