Perl interface to NGS copy number algorithms

 Support code for NGS copy number algorithms. Takes a file of locations
 and a [cr|b]am file and generates a count of coverage of each allele
 [ACGT] at that location (given any filter settings).
 .
 The alleleCount package primarily exists to prevent code duplication
 between some other projects, specifically AscatNGS and Battenberg.
 .
 This package provided the Perl interface to alleleCounter providing
 Sanger::CGP::AlleleCount::Genotype.