Binary package “libseqlib-dev” in ubuntu jammy
C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev)
C++ API and command line tool that provides a rapid and user-friendly
interface to BAM/SAM/CRAM files, global sequence alignment operations
and sequence assembly. Four C libraries perform core operations in
SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment
and Fermi for error correction and sequence assembly. Benchmarking
indicates that SeqLib has lower CPU and memory requirements than leading
C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct
and assemble reads from a CRAM file and then align with BWA-MEM.
SeqLib also provides additional capabilities, including chromosome-aware
interval queries and read plotting. Command line tools are available for
performing integrated error correction, micro-assemblies and alignment.
.
This package contains the header files and static library.
Source package
Published versions
- libseqlib-dev 1.2.0+dfsg-8build1 in amd64 (Proposed)
- libseqlib-dev 1.2.0+dfsg-8build1 in amd64 (Release)
- libseqlib-dev 1.2.0+dfsg-8build1 in arm64 (Proposed)
- libseqlib-dev 1.2.0+dfsg-8build1 in arm64 (Release)
- libseqlib-dev 1.2.0+dfsg-8build1 in armhf (Proposed)
- libseqlib-dev 1.2.0+dfsg-8build1 in armhf (Release)
- libseqlib-dev 1.2.0+dfsg-8build1 in ppc64el (Proposed)
- libseqlib-dev 1.2.0+dfsg-8build1 in ppc64el (Release)
- libseqlib-dev 1.2.0+dfsg-8build1 in riscv64 (Proposed)
- libseqlib-dev 1.2.0+dfsg-8build1 in riscv64 (Release)
- libseqlib-dev 1.2.0+dfsg-8build1 in s390x (Proposed)
- libseqlib-dev 1.2.0+dfsg-8build1 in s390x (Release)