Binary package “plasmidseeker” in ubuntu jammy
identification of known plasmids from whole-genome sequencing reads
PlasmidSeeker is a k-mer based program for the identification of known
plasmids from bacterial whole genome sequencing reads.
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PlasmidSeeker that enables the detection of plasmids from bacterial WGS
data without read assembly. The PlasmidSeeker algorithm is based on
k-mers and uses k-mer abundance to distinguish between plasmid and
bacterial sequences. The performance of PlasmidSeeker was tested on a set
of simulated and real bacterial WGS samples, resulting in 100%
sensitivity and 99.98% specificity.
Source package
Published versions
- plasmidseeker 1.3+dfsg-2 in amd64 (Proposed)
- plasmidseeker 1.3+dfsg-2 in amd64 (Release)
- plasmidseeker 1.3+dfsg-2 in arm64 (Proposed)
- plasmidseeker 1.3+dfsg-2 in arm64 (Release)
- plasmidseeker 1.3+dfsg-2 in armhf (Proposed)
- plasmidseeker 1.3+dfsg-2 in armhf (Release)
- plasmidseeker 1.3+dfsg-2 in ppc64el (Proposed)
- plasmidseeker 1.3+dfsg-2 in ppc64el (Release)
- plasmidseeker 1.3+dfsg-2 in riscv64 (Proposed)
- plasmidseeker 1.3+dfsg-2 in riscv64 (Release)
- plasmidseeker 1.3+dfsg-2 in s390x (Proposed)
- plasmidseeker 1.3+dfsg-2 in s390x (Release)