Binary package “yanagiba” in ubuntu jammy
filter low quality Oxford Nanopore reads basecalled with Albacore
Yanagiba is used to filter short or low quality Oxford Nanopore reads
which have been basecalled with Albacore. It takes fastq.gz and an
Albacore summary file as input. If no Albacore summary file is provided
attempt to calculate mean qscore from directly from fastq file using
NanoMath. Note: Calculated quality scores appear to be lower for reads
called with Metrichor, you may need to lower your minqual setting in
this case.
Source package
Published versions
- yanagiba 1.0.0-5 in amd64 (Proposed)
- yanagiba 1.0.0-5 in amd64 (Release)
- yanagiba 1.0.0-5 in arm64 (Proposed)
- yanagiba 1.0.0-5 in arm64 (Release)
- yanagiba 1.0.0-5 in armhf (Proposed)
- yanagiba 1.0.0-5 in armhf (Release)
- yanagiba 1.0.0-5 in i386 (Proposed)
- yanagiba 1.0.0-5 in i386 (Release)
- yanagiba 1.0.0-5 in ppc64el (Proposed)
- yanagiba 1.0.0-5 in ppc64el (Release)
- yanagiba 1.0.0-5 in riscv64 (Proposed)
- yanagiba 1.0.0-5 in riscv64 (Release)
- yanagiba 1.0.0-5 in s390x (Proposed)
- yanagiba 1.0.0-5 in s390x (Release)