freecontact binary package in Ubuntu Jammy amd64

 FreeContact is a protein residue contact predictor optimized for speed.
 Its input is a multiple sequence alignment. FreeContact can function as an
 accelerated drop-in for the published contact predictors
 EVfold-mfDCA of DS. Marks (2011) and
 PSICOV of D. Jones (2011).
 .
 FreeContact is accelerated by a combination of vector instructions, multiple
 threads, and faster implementation of key parts.
 Depending on the alignment, 8-fold or higher speedups are possible.
 .
 A sufficiently large alignment is required for meaningful results.
 As a minimum, an alignment with an effective (after-weighting) sequence count
 bigger than the length of the query sequence should be used. Alignments with
 tens of thousands of (effective) sequences are considered good input.
 .
 jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
 can be used to generate the alignments, for example.
 .
 This package contains the command line tool freecontact(1).

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2022-01-21 19:09:04 UTC Published Ubuntu Jammy amd64 release universe science Extra 1.0.21-12
  • Published
  • Copied from ubuntu jammy-proposed amd64 in Primary Archive for Ubuntu
  Deleted Ubuntu Jammy amd64 proposed universe science Extra 1.0.21-12
  • Removal requested .
  • Deleted by Ubuntu Archive Auto-Sync

    Moved to jammy

  • Published
  2022-01-21 19:09:12 UTC Superseded Ubuntu Jammy amd64 release universe science Extra 1.0.21-11
  • Removed from disk .
  • Removal requested .
  • Superseded by amd64 build of freecontact 1.0.21-12 in ubuntu jammy PROPOSED
  • Published
  • Copied from ubuntu jammy-proposed amd64 in Primary Archive for Ubuntu
  2022-01-23 00:10:08 UTC Deleted Ubuntu Jammy amd64 proposed universe science Extra 1.0.21-11
  • Removed from disk .
  • Removal requested .
  • Deleted by Ubuntu Archive Auto-Sync

    Moved to jammy

  • Published
  2021-11-17 20:40:50 UTC Superseded Ubuntu Jammy amd64 release universe science Extra 1.0.21-10
  • Removed from disk .
  • Removal requested .
  • Superseded by amd64 build of freecontact 1.0.21-11 in ubuntu jammy PROPOSED
  • Published
  • Copied from ubuntu jammy-proposed amd64 in Primary Archive for Ubuntu
  2021-11-19 00:10:09 UTC Deleted Ubuntu Jammy amd64 proposed universe science Extra 1.0.21-10
  • Removed from disk .
  • Removal requested .
  • Deleted by Ubuntu Archive Auto-Sync

    Moved to jammy

  • Published
  2021-11-07 11:09:33 UTC Superseded Ubuntu Jammy amd64 release universe science Extra 1.0.21-9
  • Removed from disk .
  • Removal requested .
  • Superseded by amd64 build of freecontact 1.0.21-10 in ubuntu jammy PROPOSED
  • Published
  • Copied from ubuntu impish-proposed amd64 in Primary Archive for Ubuntu