libseqlib2 binary package in Ubuntu Jammy amd64
C++ API and command line tool that provides a rapid and user-friendly
interface to BAM/SAM/CRAM files, global sequence alignment operations
and sequence assembly. Four C libraries perform core operations in
SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment
and Fermi for error correction and sequence assembly. Benchmarking
indicates that SeqLib has lower CPU and memory requirements than leading
C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct
and assemble reads from a CRAM file and then align with BWA-MEM.
SeqLib also provides additional capabilities, including chromosome-aware
interval queries and read plotting. Command line tools are available for
performing integrated error correction, micro-assemblies and alignment.
Publishing history
| Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
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| 2021-12-14 14:04:16 UTC | Published | Ubuntu Jammy amd64 | release | universe | libs | Optional | 1.2.0+dfsg-8build1 | ||
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| Deleted | Ubuntu Jammy amd64 | proposed | universe | libs | Optional | 1.2.0+dfsg-8build1 | |||
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| 2021-12-14 14:04:34 UTC | Superseded | Ubuntu Jammy amd64 | release | universe | libs | Optional | 1.2.0+dfsg-8 | ||
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| 2021-12-15 18:10:08 UTC | Deleted | Ubuntu Jammy amd64 | proposed | universe | libs | Optional | 1.2.0+dfsg-8 | ||
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| 2021-11-21 11:34:14 UTC | Superseded | Ubuntu Jammy amd64 | proposed | universe | libs | Optional | 1.2.0+dfsg-7 | ||
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| 2021-11-02 00:05:34 UTC | Superseded | Ubuntu Jammy amd64 | proposed | universe | libs | Optional | 1.2.0+dfsg-6 | ||
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| 2021-11-21 14:03:57 UTC | Superseded | Ubuntu Jammy amd64 | release | universe | libs | Optional | 1.2.0+dfsg-4 | ||
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