python3-shasta binary package in Ubuntu Jammy arm64

 De novo assembly from Oxford Nanopore reads. The goal of the Shasta long
 read assembler is to rapidly produce accurate assembled sequence using
 as input DNA reads generated by Oxford Nanopore flow cells.
 .
 Computational methods used by the Shasta assembler include:
 .
  * Using a run-length representation of the read sequence. This makes
    the assembly process more resilient to errors in homopolymer
    repeat counts, which are the most common type of errors in Oxford
    Nanopore reads.
 .
  * Using in some phases of the computation a representation of the read
    sequence based on markers, a fixed subset of short k-mers (k ≈ 10).
 .
 Shasta assembly quality is comparable or better than assembly quality
 achieved by other long read assemblers.
 .
 This package contains the dynamic library that can be interfaced and
 imported within Python.

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2022-03-02 17:45:17 UTC Published Ubuntu Jammy arm64 release universe python Optional 0.8.0-2ubuntu1
  • Published
  • Copied from ubuntu jammy-proposed arm64 in Primary Archive for Ubuntu
  Deleted Ubuntu Jammy arm64 proposed universe python Optional 0.8.0-2ubuntu1
  • Removal requested .
  • Deleted by Ubuntu Archive Auto-Sync

    Moved to jammy

  • Published
  2022-02-16 09:19:51 UTC Superseded Ubuntu Jammy arm64 proposed universe python Optional 0.8.0-2build1
  • Removed from disk .
  • Removal requested .
  • Superseded by arm64 build of shasta 0.8.0-2ubuntu1 in ubuntu jammy PROPOSED
  • Published
  2022-01-13 23:30:40 UTC Superseded Ubuntu Jammy arm64 proposed universe python Optional 0.8.0-2
  • Removed from disk .
  • Removal requested .
  • Superseded by arm64 build of shasta 0.8.0-2build1 in ubuntu jammy PROPOSED
  • Published
  2022-01-04 06:13:55 UTC Superseded Ubuntu Jammy arm64 proposed universe python Optional 0.8.0-1
  • Removed from disk .
  • Removal requested .
  • Superseded by arm64 build of shasta 0.8.0-2 in ubuntu jammy PROPOSED
  • Published
  2022-03-02 18:00:59 UTC Superseded Ubuntu Jammy arm64 release universe python Optional 0.7.0-3
  • Removed from disk .
  • Removal requested .
  • Superseded by arm64 build of shasta 0.8.0-2ubuntu1 in ubuntu jammy PROPOSED
  • Published
  • Copied from ubuntu hirsute-proposed arm64 in Primary Archive for Ubuntu

Source package